DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCARF2 and dsl-1

DIOPT Version :9

Sequence 1:NP_699165.3 Gene:SCARF2 / 91179 HGNCID:19869 Length:871 Species:Homo sapiens
Sequence 2:NP_500054.1 Gene:dsl-1 / 176939 WormBaseID:WBGene00001103 Length:252 Species:Caenorhabditis elegans


Alignment Length:142 Identity:33/142 - (23%)
Similarity:43/142 - (30%) Gaps:53/142 - (37%)


- Green bases have known domain annotations that are detailed below.


Human   230 QCRERTFGARCDRYC-----QCFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGLGCR-RRCGQ 288
            :|.....|..||.:|     :....|| ..:||..|..|:.|..|..|.||.    .|: :..|:
 Worm   121 KCNRYWHGLHCDHFCNDDFARTINRRC-TQNGTLGCLEGFHGPNCELPVPAD----SCKCQNGGK 180

Human   289 CKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGEGCSHRCPPCRDGHACNHVTGKCTRCNAG 353
            |......|.|:...|.||                           ||.||               
 Worm   181 CVSSLENTWAQNGSLICE---------------------------CRLGH--------------- 203

Human   354 WIGDRCETKCSN 365
            :.|..||.|..|
 Worm   204 FEGKHCEKKSFN 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARF2NP_699165.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..20
PHA03247 <534..871 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 570..871
dsl-1NP_500054.1 DSL 112..164 CDD:302925 12/43 (28%)
EGF_CA <175..210 CDD:238011 12/76 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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