DRSC/TRiP Functional Genomics Resources

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Protein Alignment LRSAM1 and Sclp

DIOPT Version :10

Sequence 1:NP_612370.3 Gene:LRSAM1 / 90678 HGNCID:25135 Length:723 Species:Homo sapiens
Sequence 2:NP_001259475.1 Gene:Sclp / 32156 FlyBaseID:FBgn0030357 Length:339 Species:Drosophila melanogaster


Alignment Length:252 Identity:59/252 - (23%)
Similarity:100/252 - (39%) Gaps:67/252 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    21 QMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLSLATIKV 85
            |.|  ::|..:..||:|.|||.:||...:...:..:.....:..|.|.|:.||.....|  ||..
  Fly    84 QRC--EDAKENHKLDLSSCELMQIPDAVYHLMRNTELITCNLSGNVLKSVSPKFSQKFS--TITD 144

Human    86 LDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVGELR 150
            |:|..|:|:.||::...|:||..||:..|..:.||:.:..|..|.:|:.::|.:.|: ||...:.
  Fly   145 LNLSHNKLSRLPEEFASLSALTKLNISNNSFIVLPQVVFKLQSLASLDAQNNAILEI-DTDEAIT 208

Human   151 S--LRTLNISGNEIQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFLCKESGLEYY 213
            |  |..:::..|.:.|                                       .|:.....:.
  Fly   209 SDNLALVDLRNNPLSR---------------------------------------NCRRKLQSFK 234

Human   214 PPSQYLLPILEQDGIENSRDSPDGPTDRF---SREELEWQN-----RFSDYEKRKEQ 262
            .|..          :|.|:|..|   |.|   |||...|.:     .||:|:..:::
  Fly   235 TPFH----------LEISKDVED---DWFLTKSREITRWDSHLGFGNFSNYDSTRKR 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRSAM1NP_612370.3 LRR 1 30..51 8/20 (40%)
LRR <33..>181 CDD:443914 41/149 (28%)
leucine-rich repeat 33..54 CDD:275380 8/20 (40%)
leucine-rich repeat 55..82 CDD:275380 6/26 (23%)
LRR 2 56..77 5/20 (25%)
LRR 3 82..103 8/20 (40%)
leucine-rich repeat 83..105 CDD:275380 8/21 (38%)
LRR 4 105..127 7/21 (33%)
leucine-rich repeat 106..128 CDD:275380 7/21 (33%)
LRR 5 128..149 6/20 (30%)
leucine-rich repeat 129..151 CDD:275380 6/21 (29%)
LRR 6 151..172 4/22 (18%)
Smc <240..>541 CDD:440809 9/31 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..314
SAM_TAL 567..631 CDD:188922
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 642..665
PTAP motif 1 649..652
PTAP motif 2 661..664
RING-HC_LRSAM1 673..719 CDD:438178
SclpNP_001259475.1 LRR <93..>223 CDD:443914 40/132 (30%)
leucine-rich repeat 93..115 CDD:275380 8/21 (38%)
leucine-rich repeat 116..141 CDD:275380 6/26 (23%)
leucine-rich repeat 142..164 CDD:275380 8/21 (38%)
leucine-rich repeat 165..187 CDD:275380 7/21 (33%)
leucine-rich repeat 188..211 CDD:275380 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.

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