DRSC/TRiP Functional Genomics Resources

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Protein Alignment SAMD1 and mys-2

DIOPT Version :9

Sequence 1:NP_612361.1 Gene:SAMD1 / 90378 HGNCID:17958 Length:538 Species:Homo sapiens
Sequence 2:NP_001309531.1 Gene:mys-2 / 173281 WormBaseID:WBGene00010537 Length:533 Species:Caenorhabditis elegans


Alignment Length:81 Identity:24/81 - (29%)
Similarity:29/81 - (35%) Gaps:17/81 - (20%)


- Green bases have known domain annotations that are detailed below.


Human    66 PERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPT 130
            |.:||.|.|:..|:.|....|.:.|.|......|.|.   ||||...:             |..|
 Worm   461 PAQTRPEFERQQQRTAAAMTSRRASKSQNVTPLVTPL---ATPPIEQK-------------PEDT 509

Human   131 PAPPP-PPAPVAAAAP 145
            ..|.| ....||..||
 Worm   510 YTPSPLTDHHVATDAP 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SAMD1NP_612361.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 92..247 15/55 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..458
SAM_Atherin-like 459..527 CDD:188982
SAM 459..525 CDD:197735
mys-2NP_001309531.1 Tudor-knot 53..110 CDD:288553
NAT_SF 170..418 CDD:302625
MOZ_SAS 244..418 CDD:280097
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5027
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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