| Sequence 1: | NP_203129.1 | Gene: | LHX4 / 89884 | HGNCID: | 21734 | Length: | 390 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001116445.1 | Gene: | lhx4 / 571943 | ZFINID: | ZDB-GENE-060728-1 | Length: | 391 | Species: | Danio rerio |
| Alignment Length: | 392 | Identity: | 325/392 - (82%) |
|---|---|---|---|
| Similarity: | 355/392 - (90%) | Gaps: | 5/392 - (1%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MMQSATV-PAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQL 64
Human 65 ADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDE 129
Human 130 FYLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSET 194
Human 195 GLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFR 259
Human 260 EDQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHA 324
Human 325 PLLNGLDYTVDSNLGIIAHAGQ-GVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHP 388
Human 389 PF 390 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LHX4 | NP_203129.1 | LIM1_Lhx4 | 30..81 | CDD:188852 | 43/50 (86%) |
| LIM2_Lhx3_Lhx4 | 89..144 | CDD:188762 | 49/54 (91%) | ||
| Homeobox | 160..213 | CDD:306543 | 51/52 (98%) | ||
| Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536 | 161..181 | 18/19 (95%) | |||
| Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 | 199..211 | 11/11 (100%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 230..253 | 17/22 (77%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 356..390 | 29/33 (88%) | |||
| lhx4 | NP_001116445.1 | LIM1_Lhx4 | 33..84 | CDD:188852 | 43/50 (86%) |
| LIM2_Lhx3_Lhx4 | 92..147 | CDD:188762 | 49/54 (91%) | ||
| Homeobox | 163..216 | CDD:278475 | 51/52 (98%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C194327290 | |
| Domainoid | 1 | 1.000 | 273 | 1.000 | Domainoid score | I8554 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG4577 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H56497 | |
| Inparanoid | 1 | 1.050 | 681 | 1.000 | Inparanoid score | I4459 |
| NCBI | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 1 | 1.010 | - | - | QHG41153 | |
| OrthoDB | 1 | 1.010 | - | - | D1174754at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0002911 | |
| OrthoInspector | 1 | 1.000 | - | - | oto42017 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_106440 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR24208 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2568 |
| SonicParanoid | 1 | 1.000 | - | - | X1144 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| ZFIN | 1 | 1.500 | - | - | ||
| 18 | 18.300 | |||||