| Sequence 1: | NP_203129.1 | Gene: | LHX4 / 89884 | HGNCID: | 21734 | Length: | 390 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_001101818.2 | Gene: | Lhx4 / 360858 | RGDID: | 1308044 | Length: | 390 | Species: | Rattus norvegicus |
| Alignment Length: | 390 | Identity: | 383/390 - (98%) |
|---|---|---|---|
| Similarity: | 386/390 - (98%) | Gaps: | 0/390 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLA 65
Human 66 DRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEF 130
Human 131 YLMEDGRLVCKEDYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETG 195
Human 196 LDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFRE 260
Human 261 DQILSELGHTNRIYGNVGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAP 325
Human 326 LLNGLDYTVDSNLGIIAHAGQGVSQTLRAMAGGPTSDISTGSSVGYPDFPTSPGSWLDEMDHPPF 390
Human 391 390 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LHX4 | NP_203129.1 | LIM1_Lhx4 | 30..81 | CDD:188852 | 50/50 (100%) |
| LIM2_Lhx3_Lhx4 | 89..144 | CDD:188762 | 54/54 (100%) | ||
| Homeobox | 160..213 | CDD:306543 | 52/52 (100%) | ||
| Interaction with DNA. /evidence=ECO:0000305|PubMed:28473536 | 161..181 | 19/19 (100%) | |||
| Interaction with 5-mCpG DNA. /evidence=ECO:0000305|PubMed:28473536 | 199..211 | 11/11 (100%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 230..253 | 21/22 (95%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 356..390 | 31/33 (94%) | |||
| Lhx4 | NP_001101818.2 | LIM1_Lhx4 | 30..81 | CDD:188852 | 50/50 (100%) |
| LIM2_Lhx3_Lhx4 | 89..144 | CDD:188762 | 54/54 (100%) | ||
| Homeobox | 160..214 | CDD:395001 | 53/53 (100%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 1 | 1.000 | 354 | 1.000 | Domainoid score | I12612 |
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H56497 | |
| Inparanoid | 1 | 1.050 | 782 | 1.000 | Inparanoid score | I7739 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG41153 | |
| OrthoDB | 1 | 1.010 | - | - | D100750at40674 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0002911 | |
| OrthoInspector | 1 | 1.000 | - | - | oto131398 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_106440 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR24208 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X1144 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 15 | 15.480 | |||||