Sequence 1: | NP_004189.1 | Gene: | CHRNA6 / 8973 | HGNCID: | 15963 | Length: | 494 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_995675.1 | Gene: | nAChRalpha6 / 34304 | FlyBaseID: | FBgn0032151 | Length: | 523 | Species: | Drosophila melanogaster |
Alignment Length: | 531 | Identity: | 199/531 - (37%) |
---|---|---|---|
Similarity: | 280/531 - (52%) | Gaps: | 93/531 - (17%) |
- Green bases have known domain annotations that are detailed below.
Human 18 LCVFTPFFK-GCVGCATEERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIME 81
Human 82 TNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEGKTKALLKYNGMI 146
Human 147 TWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSK--VDMNDFWENSEWEII 209
Human 210 DASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTL 274
Human 275 CISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFT----------------------------- 310
Human 311 MIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTVFLKLLPQVLLMRWPLDK-TRGT---GSDAVP 371
Human 372 RGLARRPAK------------------------GKLASHGEPRHLKE---CFHC-HKSNELATSK 408
Human 409 RRLSHQPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDRVFLWVFII 473
Human 474 VCVFGTAGLFL 484 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CHRNA6 | NP_004189.1 | Neur_chan_LBD | 34..484 | CDD:332142 | 193/512 (38%) |
nAChRalpha6 | NP_995675.1 | LIC | 11..517 | CDD:273305 | 199/531 (37%) |
LGIC_ECD_nAChR | 55..236 | CDD:349798 | 84/181 (46%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |