DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HERC3 and Smurf

DIOPT Version :10

Sequence 1:NP_055421.1 Gene:HERC3 / 8916 HGNCID:4876 Length:1050 Species:Homo sapiens
Sequence 2:NP_523779.1 Gene:Smurf / 36999 FlyBaseID:FBgn0029006 Length:1061 Species:Drosophila melanogaster


Alignment Length:409 Identity:125/409 - (30%)
Similarity:207/409 - (50%) Gaps:45/409 - (11%)


- Green bases have known domain annotations that are detailed below.


Human   658 DAQAKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELSIH 722
            |...|.:.|:|  |||                 |::|   :|....|.|.||.:..::.|.:...
  Fly   680 DLVGKLRALRT--ELQ-----------------TMQP---QSGHCRLEVSRNEIFEESYRLIMKM 722

Human   723 SDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSN-LLWFSDTCFV--E 784
            ...|::|.|.|.|.|||.:|.|||.:|:..||.:|:|||.||:|.|.:|.: .|..:....|  :
  Fly   723 RAKDMRKRLMVKFKGEEGLDYGGVAREWLHLLSREMLNPQYGLFQYSRDDHYTLQINPDSGVNPD 787

Human   785 H-NWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGED 848
            | ::||.:|.|.|:|:::...:|..|....||:|||....|.|::.:.|...|||..:|:.....
  Fly   788 HLSYFHFVGRTLGIAVFHGHCLDGGFTTPFYKQLLNKPITLGDIEGVDPDLHRSLTWMLESNISG 852

Human   849 VEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGF 913
            :.|:   .|::...|:|.:...:|.|||.::.|.::|::|:|..||||.|...:.:.:.|...||
  Fly   853 IIES---TFSVENNSFGALVVHELKPGGASIPVTEENKREYVKLYVNYRFMRGIEQQFLALQKGF 914

Human   914 LKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKL--FWETFHEFPLEK 976
            .::....:|..|...||..::.|.|:.:..:.......|   ..|:.|.::  ||:....:..|.
  Fly   915 CELIPSHLLRPFDERELELVIGGISSIDVNDWRNNTRLK---HCTNETTQVLWFWQVVESYSSEM 976

Human   977 KKKFLLFLTGSDRIPIYGMASLQ----------IVIQSTAS-GEEYLPVAHTCYNLLDLPKYSSK 1030
            :.:.|.|:|||.|:|:.|..:||          ..|..||. ..:.||.||||:|.:|||.|.:.
  Fly   977 RARLLQFVTGSSRVPLQGFRALQGSTGAVGPRLFTIHLTADVPTQNLPKAHTCFNRIDLPPYETY 1041

Human  1031 EILSARLTQALDNYEGFSL 1049
            ::|..:||||::...||::
  Fly  1042 QLLCDKLTQAVEETCGFAV 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC3NP_055421.1 RCC1 1 1..51
ATS1 3..341 CDD:444065
RCC1 2 52..101
RCC1 3 102..154
RCC1 4 156..207
RCC1 5 208..259
RCC1 6 261..311
RCC1 313..377 CDD:395335
RCC1 7 313..366
HECTc 702..1048 CDD:238033 114/362 (31%)
SmurfNP_523779.1 C2_Smurf-like 14..135 CDD:176028
PRP40 155..>283 CDD:227435
WW 169..198 CDD:459800
WW 514..546 CDD:197736
WW 562..594 CDD:197736
HECTc 702..1058 CDD:238033 113/361 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.