Protein Alignment PABPC4 and mod

DIOPT Version :10

• Sequence 1: NP_001129125.1
• Gene: PABPC4 / 8761
• HGNCID: 8557
• Length: 660
• Species: Homo sapiens
• Sequence 2: NP_524614.2
• Gene: mod / 43764
• FlyBaseID: FBgn0002780
• Length: 542
• Species: Drosophila melanogaster
• Alignment Length: 323
• Identity: 71/323 - (21%)
• Similarity: 128/323 - (39%)
• Gaps: 63/323 - (19%)

Human    87 SQRDPSLRKSGVGN----------VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYA 141
            |:.:..:.|..||.          ||:.||.....:|.|...|:.||.:.:.:...:.||:|. .
  Fly   153 SEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKS-V 216

Human   142 FVHFETQEAADKAIE-KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
            .:.|:|...|:..:: |...:.|.|..:.|.:.::::|....         .|.:...|..:..:
  Fly   217 LIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPRNKEENNER---------TVVVGLIGPNITKD 272

Human   206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
            .||..|.   |...|:.:...:.:.....||.....:|..||: :::..|:..:.|.|.|
  Fly   273 DLKTFFE---KVAPVEAVTISSNRLMPRAFVRLASVDDIPKAL-KLHSTELFSRFITVRR----- 328

Human   271 ERQAELKRKFEQLKQERISRYQGVNLYIKNL--DDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK 333
                        :.||.|||...:.|.::|:  .::...:.|.|.|..||.:....|:.    ||
  Fly   329 ------------ISQESISRTSELTLVVENVGKHESYSSDALEKIFKKFGDVEEIDVVC----SK 377

Human   334 G-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPAN 395
            . ..||.|...:.||||:.:::|:.|           .|.|.|.|   ::.:..:|...|..|
  Fly   378 AVLAFVTFKQSDAATKALAQLDGKTV-----------NKFEWKLH---RFERSTSGRAILVTN 426

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC4	NP_001129125.1	PABP-1234	11..640	CDD:130689	71/323 (22%)
mod	NP_524614.2	RRM_SF	177..244	CDD:473069	18/67 (27%)
		PABP-1234	262..>470	CDD:130689	46/204 (23%)
		RRM_SF	339..414	CDD:473069	23/92 (25%)