Protein Alignment PABPC4 and lark

DIOPT Version :10

• Sequence 1: NP_001129125.1
• Gene: PABPC4 / 8761
• HGNCID: 8557
• Length: 660
• Species: Homo sapiens
• Sequence 2: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Alignment Length: 175
• Identity: 48/175 - (27%)
• Similarity: 85/175 - (48%)
• Gaps: 20/175 - (11%)

Human    96 SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
            :|...:||.|||:......|...|..:|.::.|.||      |.|.|||.||::....||:.:||
  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62

Human   161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
            ..||:..:.|...|||:       |.....|.:::.|..::.....::|||.::|..:...::|:
  Fly    63 YTLNEFAIKVEAAKSRR-------APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN 120

Human   226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
                   :|||..:...|...|::|:||:.:.|:.:.|..:..:|
  Fly   121 -------YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV 158

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC4	NP_001129125.1	PABP-1234	11..640	CDD:130689	48/175 (27%)
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	24/70 (34%)
		RRM1_2_CoAA_like	87..152	CDD:409779	15/71 (21%)
		hnRNP-R-Q	<88..>258	CDD:273732	17/78 (22%)