Protein Alignment PABPC4 and ssx

DIOPT Version :10

• Sequence 1: NP_001129125.1
• Gene: PABPC4 / 8761
• HGNCID: 8557
• Length: 660
• Species: Homo sapiens
• Sequence 2: NP_569908.1
• Gene: ssx / 31086
• FlyBaseID: FBgn0024987
• Length: 485
• Species: Drosophila melanogaster
• Alignment Length: 251
• Identity: 71/251 - (28%)
• Similarity: 115/251 - (45%)
• Gaps: 40/251 - (15%)

Human   191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
            ||:.|....:::.|..|..|||..|...:.|:||| ..|.|.|:|||.|:...|:..|::::||.
  Fly    93 TNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGF 157

Human   255 EISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
            .:               |...||..:.:...:.|   :..|||:.||...|:|:.|.:.|||:|.
  Fly   158 YV---------------RNKRLKVSYARPGGQSI---KDTNLYVINLSRNINDDMLDRIFSPYGL 204

Human   320 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYVALAQRKEERKAHLTN 380
            |....::.:  .||.:|..||.::..|||.:|:..:|..:.  ||:|::|.||:...:.||   .
  Fly   205 IVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKA---A 266

Human   381 QYMQRVAGMRALPANAILNQFQPAAGGYFVPAV-PQAQGRPPYYTPNQLAQMRPNP 435
            |:|.::.|..             ..||...|.: |.....||::..|.......||
  Fly   267 QFMAQIGGGN-------------GGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNP 309

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC4	NP_001129125.1	PABP-1234	11..640	CDD:130689	71/251 (28%)
ssx	NP_569908.1	sex-lethal	<76..272	CDD:273740	61/199 (31%)