DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNX4 and Snx1

DIOPT Version :9

Sequence 1:XP_016862903.1 Gene:SNX4 / 8723 HGNCID:11175 Length:482 Species:Homo sapiens
Sequence 2:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster


Alignment Length:534 Identity:116/534 - (21%)
Similarity:207/534 - (38%) Gaps:137/534 - (25%)


- Green bases have known domain annotations that are detailed below.


Human     1 MEQAPPDPERQLQPAPLEPLGSPDAGLGAAVGKEAEGAGEESSGVDTMTHNNFWLKKIEISVSEA 65
            ||...|:..|.        ....|...|||.|.|.|.....:.|..|:..|     :.::.||..
  Fly     1 MEVESPEHTRD--------FAEVDINNGAATGSEDEEEEVPAPGSVTLDRN-----ESDLFVSAL 52

Human    66 EKRTGRNAMNMQE-------------------------TYTAYLIETRSVEHTDGQSVLTDSLWR 105
            ...:..:...:||                         :|.||.:.|::......:|..  |..|
  Fly    53 SPSSIGDIHPLQEVLTDDGDYFISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEF--STLR 115

Human   106 RYSEFELLRSYLLVYYPHI--VVPPLPEKR---AEFVWHKLSADNMDP------DFVERRRIGLE 159
            |:|:|..:...|:..|..:  ::||.|.|.   :..|  |:|....:|      ::||.||..||
  Fly   116 RFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGSTKV--KISPQQSEPGTPMTQEWVEIRRAALE 178

Human   160 NFLLRIASHPILCRDKIFYLFLTQEGNWKETVNETGFQLKADSRL-----KALN-ATFRVKNPDK 218
            .|:.|.|.||:|..|..|..||..:.....:||.:........||     :.:| .|:::...|.
  Fly   179 RFVHRTAQHPVLRVDLDFMNFLESDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDP 243

Human   219 RFTDLKHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVF--RHSWSLFFFLISWSYKIL- 280
            .|.|   ...|::|:.::|              .|:|.....:.  |...||...|::.|..:| 
  Fly   244 WFDD---KITEVESLDANL--------------QKLHNAMKSLVTSRRELSLLTGLVAKSAAMLS 291

Human   281 --ERPLWFFSSSSRSKSEWSAIEKEMGDGLQSAGHHMDVYASSIDDILEDEEHYADQLKEYLFYA 343
              |.    .:..||:.|..:.:|::: :.|:|...:.|.:      ||      |:.:|:||...
  Fly   292 TCEE----HTGLSRALSNLADVEEKI-ELLRSEQANSDFF------IL------AEFIKDYLGLF 339

Human   344 EALRAVCRKHELM------QYDLEMAAQDLASKKQQCEELVTGTVRTFSLKGMTTKL-FGQETPE 401
            .|::  |..||.:      ||     ||...||:::       ....|.|.....|| ..|:..:
  Fly   340 GAIK--CIFHERVKAFQNWQY-----AQMQLSKRRE-------NRGRFELANRADKLDQAQQEVD 390

Human   402 QREARIKVLEEQINEGEQQLKSKNLEGREFVKNAWADIERFKEQKNRDLKEALISYAVMQISMCK 466
            :.:.:::..::|.::...::|              .::|||:..:.:|.|..:|.|...|::..:
  Fly   391 EWQGKVQRCQQQFDDISAEIK--------------REMERFELTRVKDFKVNIIKYIEDQMAHQQ 441

Human   467 KGIQVWTNAKECFS 480
            :.:..|    |.|:
  Fly   442 QIVSYW----EAFA 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNX4XP_016862903.1 None
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 36/131 (27%)
BAR_SNX1_2 232..455 CDD:153307 58/286 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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