DRSC/TRiP Functional Genomics Resources

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Protein Alignment SRSF9 and rump

DIOPT Version :10

Sequence 1:NP_003760.1 Gene:SRSF9 / 8683 HGNCID:10791 Length:221 Species:Homo sapiens
Sequence 2:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster


Alignment Length:113 Identity:32/113 - (28%)
Similarity:55/113 - (48%) Gaps:9/113 - (7%)


- Green bases have known domain annotations that are detailed below.


Human    71 GRNGYDYGQCR-LRVEFPRTYGGR---GGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHM 131
            |.:|.||.... |.|     |||.   |....|..|.....|....:::..:|.:.:||.|:|..
  Fly   524 GVDGNDYNTGNPLDV-----YGGGSNVGNSNVGSANAVGASRKSDTIIIKNVPITCTWQTLRDKF 583

Human   132 REAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY 179
            ||.|||.:|:::.:.||:|.:.::.|.|.|:..:|.::......:.:|
  Fly   584 REIGDVKFAEIRGNDVGVVRFFKERDAELAIALMDGSRLDGRNIKVTY 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRSF9NP_003760.1 RRM1_SRSF9 15..86 CDD:241042 6/15 (40%)
RRM2_SRSF9 104..186 CDD:410161 20/76 (26%)
Interaction with SAFB1 188..200
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 189..221
rumpNP_649899.1 PABP-1234 48..435 CDD:130689
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069 18/63 (29%)
Blue background indicates that the domain is not in the aligned region.

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