DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42514 and srf-3

DIOPT Version :9

Sequence 1:NP_730171.1 Gene:CG42514 / 8674108 FlyBaseID:FBgn0260388 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001255676.1 Gene:srf-3 / 187393 WormBaseID:WBGene00005153 Length:368 Species:Caenorhabditis elegans


Alignment Length:363 Identity:69/363 - (19%)
Similarity:123/363 - (33%) Gaps:114/363 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 KLPLLMGLVGKFFYSTMIVVNARMTTW-PVQNIIYS-------ATLPSALTGADVAIFAS----C 200
            |:|:.:..||:....:...:...:..| .:||.|::       |....|:..:.||::.:    |
 Worm    22 KIPVPLVSVGRESSQSKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTEVIKC 86

  Fly   201 F-----------------AYISDISSLQQRTIRVTILDVIYLSAMPMGVALGSHLFYNVFNQSYA 248
            |                 |..:.|......|::|.|..:||:        :.::|||...:...|
 Worm    87 FICLFLVAQEETPRRFIHALRTQILEQPYDTLKVCIPAMIYI--------VQNNLFYVAASHLDA 143

  Fly   249 DMFTVNASL-LALAIIYTLCALK-------W---------------QTTPRQRSLRE-------- 282
            ..|.:.:.| :..|.|:|:..|:       |               |.|..:.|..|        
 Worm   144 ATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGESPFVGFVA 208

  Fly   283 --LGCC--GFWGDFFDKQHVKDSLAVLVKPRKGHRRSFLIILLVSMALYTFQRDEGQYLYMYTLG 343
              :.||  ||.|.:|:| .:|.|..|.:..|......|.|....|.......:...:|..:|...
 Worm   209 VVVACCLSGFAGIYFEK-ILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKTVNEYGLLYGFD 272

  Fly   344 KFDW-----------DVSAYSNF-----KTFKSSAYVIAMLLA-------VPLMNKILGWRDTTI 385
            ...|           .|:....:     |.|.:|..:|...:.       :|....:||  .:.:
 Worm   273 SIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFDFIPSFTFLLG--ASLV 335

  Fly   386 IFIGTWAHSIARLFFYFATNTDLLYAGAVVCSLGPIVG 423
            ||         .:|.|.:..       ::|.:||.:.|
 Worm   336 IF---------SIFLYSSHQ-------SMVAALGRLRG 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42514NP_730171.1 MFS_1 129..458 CDD:284993 69/363 (19%)
MFS 132..495 CDD:119392 69/363 (19%)
srf-3NP_001255676.1 Nuc_sug_transp 40..343 CDD:282054 60/322 (19%)
EamA 119..342 CDD:304911 47/242 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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