DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CanA-14F and ppp5c

DIOPT Version :9

Sequence 1:NP_001245717.1 Gene:CanA-14F / 8674098 FlyBaseID:FBgn0267912 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001007891.1 Gene:ppp5c / 493275 XenbaseID:XB-GENE-982044 Length:493 Species:Xenopus tropicalis


Alignment Length:303 Identity:111/303 - (36%)
Similarity:162/303 - (53%) Gaps:22/303 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 LKQHFILEGRIEESAALRIIQEGATLLRTEKTMIDI----EAPVTVCGDIHGQFYDLMKLFEIGG 180
            |.|.:..:.::......:::.:...:|....::::|    ...||||||.||||||||.:|.:.|
 Frog   188 LMQFYKDQKKLHRKCVYQMLVQVKDILSKLPSLVEISLEKSQQVTVCGDTHGQFYDLMNIFHLNG 252

  Fly   181 SPA-TTKYLFLGDYVDRGYFSIECVLYLWSLKITYPQTLFLLRGNHECRHLTEYFTFKQECKIKY 244
            .|: ...|:|.||:||||.||:|.::.|:..|:.||....|||||||...:.:.:.|:.|.|.||
 Frog   253 LPSENNPYIFNGDFVDRGSFSVEVIVTLFGFKLLYPAQFHLLRGNHETDTMNQMYGFEGEVKAKY 317

  Fly   245 SERVYDACMDAFDCLPLAALMNQQFLCVHGGL-SPEIHELEDIRRLDRFKEPPAFGPMCDLLWSD 308
            |.:::....:.|..||||..:||:.|.:|||| |.:...|:.||.::|.::||..||||||||||
 Frog   318 SAQMFQLFSEVFQWLPLAMCVNQRVLIMHGGLFSEDGVTLDQIRSIERNRQPPDSGPMCDLLWSD 382

  Fly   309 PLEDFGNEKNSDFYTHNSVRGCSYFYSYAACCDFLQNNNLLSIIRAHEAQDAGYRMYRKSQTTGF 373
            |....|..        :|.||.|..:.......||:.|.|..|||:||.:..||.:....     
 Frog   383 PQPQDGRS--------SSKRGVSCQFGPDVTRRFLEENGLDYIIRSHEVKPEGYEVSHNG----- 434

  Fly   374 PSLITIFSAPNYLDVYNNKAAVLKYENNVM--NIRQFNCSPHP 414
             ..:|:||||||.|...||.|.:....:.:  ...||...|||
 Frog   435 -LCVTVFSAPNYCDQMGNKGAYIHLNGSDLKPKFHQFEAVPHP 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CanA-14FNP_001245717.1 MPP_PP2B 115..419 CDD:277361 111/303 (37%)
PP2Ac 132..403 CDD:197547 104/276 (38%)
ppp5cNP_001007891.1 PLN03088 22..>232 CDD:330826 4/43 (9%)
TPR repeat 22..50 CDD:276809
TPR repeat 55..85 CDD:276809
TPR repeat 90..118 CDD:276809
MPP_PP5_C 170..485 CDD:277362 111/303 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.