DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FDY and Serbp1

DIOPT Version :9

Sequence 1:NP_001303579.2 Gene:FDY / 8674077 FlyBaseID:FBgn0265047 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_006236678.1 Gene:Serbp1 / 246303 RGDID:619907 Length:407 Species:Rattus norvegicus


Alignment Length:468 Identity:129/468 - (27%)
Similarity:182/468 - (38%) Gaps:149/468 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NRYELLFMDDDD----------------SSGLEQPQIAAVVAAPKKPEPAKAPKVPKSKSEKENK 55
            ||::.||.|:.|                ..|:..|...:...|..:.....|.|..:.:|:|:.|
  Rat    15 NRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRK 79

  Fly    56 -PV-----VAGRKANT--PVAKNASPVKGGKGPAGGDVGRPKNPTANGANN------QGRFNNNQ 106
             |:     ||.:|..|  |||.....::        .|||..:....|...      :.|....:
  Rat    80 NPLPPSVGVADKKEETQPPVALKKEGIR--------RVGRRPDQQLQGDGKIIDRRPERRPPRER 136

  Fly   107 RY----GNKESIGEFGNELP--QRQFNNRDNRGPPR------VRSGEKF---GKREFDRQSGSDK 156
            |:    ..|...|||..:.|  :|....|...|..|      :..|:.|   |||||||.||||:
  Rat   137 RFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDR 201

  Fly   157 ------TGVKSIDKREGVGAHNWG--------SPK----------QDIEDLKTTGETSPQAEKKD 197
                  :|:|..|||.|.|:||||        |||          .|:|....|.|| |:.|:..
  Rat   202 SSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEET-PEGEEHP 265

  Fly   198 SANEQSADPAV-AAEEDESKQMTLDEWKALRDQ-RAKPNYNLRKAGEGAADNAEWKKMIVL--SK 258
            .|:.::.:..| ..:|:..|:||||||||:::: |||..:|:||..|||  :.:|||..||  ||
  Rat   266 VADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGA--DGQWKKGFVLHKSK 328

  Fly   259 KKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKGGFRKGTRRGAGPCEGGFRNDGPRGE 323
            .:|:::||.                 ::|..          |||.........|..|.:.|..|.
  Rat   329 SEEAHAEDS-----------------VMDHH----------FRKPANDITSQLEINFGDLGRPGR 366

  Fly   324 GGYRNDGPRGEGGYRNEGPRGEGYRNDGPREQGFRGPRFNNAPSNGYENRQDNNRFGEKRRSAEK 388
            ||....|.||.||..|.|.|.:                                     :.||..
  Rat   367 GGRGGRGGRGRGGRPNRGSRTD-------------------------------------KSSASA 394

  Fly   389 PLKVDDEAQFPTL 401
            | .|||...||.|
  Rat   395 P-DVDDPEAFPAL 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FDYNP_001303579.2 HABP4_PAI-RBP1 144..242 CDD:335891 50/123 (41%)
PRK11634 <308..368 CDD:236941 14/59 (24%)
Serbp1XP_006236678.1 IHABP4_N 5..152 CDD:406560 31/144 (22%)
HABP4_PAI-RBP1 189..312 CDD:398441 50/123 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 80 1.000 Domainoid score I8380
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I4446
OMA 1 1.010 - - QHG48663
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002116
OrthoInspector 1 1.000 - - mtm9023
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12299
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1570
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

Return to query results.
Submit another query.