DRSC/TRiP Functional Genomics Resources

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Protein Alignment mgl and vldlr

DIOPT Version :9

Sequence 1:NP_001096924.2 Gene:mgl / 8674055 FlyBaseID:FBgn0261260 Length:4769 Species:Drosophila melanogaster
Sequence 2:XP_005155618.1 Gene:vldlr / 393897 ZFINID:ZDB-GENE-040426-803 Length:877 Species:Danio rerio


Alignment Length:822 Identity:306/822 - (37%)
Similarity:423/822 - (51%) Gaps:106/822 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  2867 CSPNEFRCNNGRCIFKSWKCDHENDCKDGSDELGCVYPPCVDGEFTCANGRCIPQAQVCNGVNDC 2931
            |..::|:|.|||||...|:||.:.||.|||||..||...|.:.:|.|.:|:|||:.         
Zfish    29 CEQSQFQCGNGRCIPSVWQCDGDMDCSDGSDETSCVRKTCAEVDFVCRSGQCIPKR--------- 84

  Fly  2932 KDNATSDETHERCPMNTTCPANHLKCEKTNICVEPYWLCDGDNDCGDNSDEDPLHCGQRTCPTNS 2996
                                                |.|||:.||.|.|||....|..|||..|.
Zfish    85 ------------------------------------WQCDGEPDCEDGSDESIEMCHTRTCRVNE 113

  Fly  2997 FRC--PNHRCIPATWYCDGDDDCGDGADEPPDYCKSEGRTCFGDLFTCDNGNCIPRIYICDGDND 3059
            |.|  .:.:|||..|.|||:.||.:|.||    ......||....|||.:|.|:.|.::|:|::|
Zfish   114 FSCGVGSTQCIPVFWKCDGEKDCDNGEDE----INCGNITCAPLEFTCSSGRCVSRKFVCNGEDD 174

  Fly  3060 CLDNSDEDNRHQCNDRKCDEETEFTCVENKSWQRAQCIPKKWICDGDPDCVDGADENTTL--HNC 3122
            |.|.|||.:   |....| ..:|..|..|      .|||:.|:||.|.||.|.:||:...  ||.
Zfish   175 CGDGSDEQD---CAPSSC-SPSEIPCGNN------TCIPRSWLCDDDVDCQDQSDESPERCGHNP 229

  Fly  3123 ATQQPCGEDMFTCGNGRCINKGWICDHDNDCGDGTDEGKFCNSKYKTCSAQEFTCQNFKCIRNQS 3187
            .....|......||:|.||::.|.||.|.||.||:|| |.|::  :.|...:|.|.:..||....
Zfish   230 TPPAKCSPSEMQCGSGECIHRKWRCDGDPDCKDGSDE-KNCSA--RNCRPDQFKCDDGSCIHGSR 291

  Fly  3188 RCDGEDDCGDHSDEVGCAKENIT-C-PQGQFACTNGQCIDYNLVCNKYPDCADESDEP-AHCNVD 3249
            :|:|..||.|.:|||.|  :|:| | ...||.|.:|:||:.:.||||..||.|.|||| ..||::
Zfish   292 QCNGFRDCVDGTDEVNC--KNLTQCNSSDQFKCRSGECIEMSKVCNKVRDCPDWSDEPIKECNMN 354

  Fly  3250 ECAKVEINQ--CGHKCVDTLTGYYCDCNEGYKLLADGKACADVDECLEQPGACSQHCSNTPGGFY 3312
            ||.   ||.  |.|.|.|...|:.|||..|.:|: |.|.|.||:||| .||.|||.|.|..||:.
Zfish   355 ECL---INNGGCSHICRDLTIGFECDCTPGLQLI-DRKTCGDVNECL-NPGICSQICINLKGGYK 414

  Fly  3313 CKCDETYYERQNDEHT--CKRKDKIPPWLIFTNKYYVRNMSVDGHQYNLMHQDLMNVVALDFDIR 3375
            |:|...|   |.|..|  ||...| .|.|||||:..:|.:.::..:|..:.:.|.|.||||.|..
Zfish   415 CECHNGY---QMDPTTGVCKAVGK-EPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFI 475

  Fly  3376 EEYMYFCDVTAKTIFRAKYGEADDEMPPEREAVIRHDSHGLEGIAIDWVGRKLYWLDRHSKNLDV 3440
            ::.:::.|:..|.||.....:.|     |....:..|.....|||:||:.:.:||.|..||::.|
Zfish   476 QQMIFWADLGQKAIFSTVLDKQD-----ESHKKVIDDVQMPVGIAVDWIYKNIYWSDLGSKSITV 535

  Fly  3441 SELDGSKRKTL-RSGVVDPRAIVVHPGIGYLYFTSWHLQAYIAKMGMDGSNFSRILNWNDGIAWP 3504
            :..:|:|:|.| .||:.:|.:|.|.|..|:||::.|...|.|.|.||:| |..::|...| |.||
Zfish   536 ANFNGTKKKVLFNSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNG-NDRQVLVETD-IQWP 598

  Fly  3505 NALSIDYFTDRIYWADAHLDYIAYADLEGRHRHTVL-SGSKVPHVFALSLFDDYIYWSDWNLKAI 3568
            |.:::|....|:||.|:.|..:...||.|.:|..|| |...:.|.|||::|:|.::|:|...:||
Zfish   599 NGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGENEAI 663

  Fly  3569 VRANKFHGANYTVLRNTTHRPYDLHINHPLRQLPYTNPCG--TNNGGCSHLCLIAPPPESTYLNI 3631
            ..||||.|::.|:|.:..:.|.|:.:.|.|.||..||.|.  ..|||||.:||.||         
Zfish   664 YGANKFTGSDVTLLASNLNEPQDIIVYHELIQLSGTNWCNEKMENGGCSFMCLPAP--------- 719

  Fly  3632 EGYIEEGAPIFKCACPNQFYLARDMKTCVANCTAGQHLCGGR 3673
              .|.:.:|.:.|.||....||.|...|.|..|:.....||:
Zfish   720 --QINKHSPKYTCVCPEGQTLASDGLRCRAEATSAAPQDGGQ 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mglNP_001096924.2 LDLa 157..189 CDD:238060
LDLa 204..236 CDD:238060
LDLa 292..327 CDD:238060
LDLa 332..366 CDD:238060
LDLa 371..412 CDD:238060
vWFA <447..488 CDD:294047
NHL 573..>716 CDD:302697
NHL repeat 573..610 CDD:271320
NHL repeat 616..654 CDD:271320
NHL repeat 657..693 CDD:271320
FXa_inhibition 763..805 CDD:291342
LY 922..964 CDD:214531
LY 973..1007 CDD:214531
Ldl_recept_a 1188..1223 CDD:278486
LDLa 1227..1259 CDD:197566
LDLa 1268..1303 CDD:238060
LDLa 1308..1343 CDD:238060
LDLa 1356..1387 CDD:238060
LDLa 1391..1423 CDD:197566
LDLa 1435..1469 CDD:197566
FXa_inhibition 1478..1513 CDD:291342
FXa_inhibition 1522..1553 CDD:291342
LY 1625..1665 CDD:214531
LY 1667..1711 CDD:214531
Ldl_recept_b 1690..1728 CDD:278487
LY 1712..1754 CDD:214531
LY 1986..2037 CDD:214531
FXa_inhibition 2151..>2179 CDD:291342
LY 2259..2305 CDD:214531
Ldl_recept_b 2326..2366 CDD:278487
LY 2352..2392 CDD:214531
NHL 2579..>2711 CDD:302697
NHL repeat 2593..2622 CDD:271320
NHL repeat 2634..2678 CDD:271320
LY 2671..2713 CDD:214531
LDLa 2867..2901 CDD:238060 18/33 (55%)
LDLa 2906..2941 CDD:238060 7/34 (21%)
LDLa 2950..2983 CDD:238060 9/32 (28%)
LDLa 3034..3066 CDD:197566 14/31 (45%)
LDLa 3080..3115 CDD:197566 13/34 (38%)
LDLa 3128..3159 CDD:238060 14/30 (47%)
LDLa 3170..3204 CDD:238060 13/33 (39%)
LDLa 3210..3242 CDD:197566 16/33 (48%)
cEGF 3269..3292 CDD:289433 11/22 (50%)
vWFA <3284..3324 CDD:294047 19/39 (49%)
LY 3362..3394 CDD:214531 11/31 (35%)
LY 3406..3448 CDD:214531 13/41 (32%)
LY 3498..3536 CDD:214531 14/37 (38%)
LY 3536..3578 CDD:214531 19/42 (45%)
FXa_inhibition 3607..3659 CDD:291342 18/53 (34%)
LDLa 3663..3696 CDD:238060 3/11 (27%)
LDLa 3705..3739 CDD:238060
LDLa 3743..3775 CDD:197566
LDLa 3784..3817 CDD:197566
LDLa 3827..3861 CDD:197566
LDLa 3871..3901 CDD:197566
LDLa 3913..3947 CDD:238060
LDLa 3952..3986 CDD:238060
LDLa 3996..4027 CDD:197566
LDLa 4043..4071 CDD:238060
LDLa 4086..4117 CDD:238060
EGF_CA 4163..4194 CDD:214542
NHL 4276..>4426 CDD:302697
NHL repeat 4291..4336 CDD:271320
Ldl_recept_b 4350..4390 CDD:278487
NHL repeat 4376..4422 CDD:271320
vldlrXP_005155618.1 LDLa 29..63 CDD:238060 18/33 (55%)
LDLa 67..99 CDD:197566 15/76 (20%)
Ldl_recept_a 107..145 CDD:278486 18/41 (44%)
Ldl_recept_a 149..184 CDD:278486 16/37 (43%)
Ldl_recept_a 234..269 CDD:278486 17/35 (49%)
Ldl_recept_a 272..308 CDD:278486 13/35 (37%)
LDLa 316..346 CDD:238060 14/29 (48%)
FXa_inhibition 356..390 CDD:291342 15/37 (41%)
EGF_CA 392..426 CDD:214542 19/37 (51%)
NHL 479..>570 CDD:302697 31/95 (33%)
LY 504..541 CDD:214531 12/36 (33%)
NHL repeat 511..551 CDD:271320 16/39 (41%)
Ldl_recept_b 564..604 CDD:278487 17/41 (41%)
LY 588..630 CDD:214531 15/42 (36%)
Ldl_recept_b 651..690 CDD:278487 14/38 (37%)
FXa_inhibition 707..745 CDD:291342 17/48 (35%)
Mucin <723..817 CDD:250634 12/37 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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