DRSC/TRiP Functional Genomics Resources

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Protein Alignment mgl and Lrp12

DIOPT Version :9

Sequence 1:NP_001096924.2 Gene:mgl / 8674055 FlyBaseID:FBgn0261260 Length:4769 Species:Drosophila melanogaster
Sequence 2:NP_001128355.1 Gene:Lrp12 / 314941 RGDID:1304943 Length:858 Species:Rattus norvegicus


Alignment Length:389 Identity:108/389 - (27%)
Similarity:147/389 - (37%) Gaps:127/389 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1129 ADDQVS------CIPDPSAEPPVQPCPNSWDFTCNNQRCIPKSWLCDGDDDCLDNSDEE---QNC 1184
            :||.||      ......:|.|...|.   .|.|.|.:|||::|.|:..|:|.|:||||   |:.
  Rat   143 SDDSVSRKGFRLAYFSGKSEEPHCACD---QFRCGNGKCIPEAWKCNSMDECGDSSDEEVCVQDA 204

  Fly  1185 TKPT------CGSNEFQCRSG-----RCIPQNFRCDQENDCGDNSDEQECGNVTCGT------SQ 1232
            ..||      |..|:|||.|.     .|:|::.:||...||.|..||.:|...|||.      ..
  Rat   205 HPPTTTAFQPCAYNQFQCLSRFTKVYTCLPESLKCDGNIDCLDLGDEIDCDMPTCGQWLKYFYGT 269

  Fly  1233 FACANGRCIPNMW----KCDSENDCG--------------DSSDEGD------------------ 1261
            |:..|   .|:.:    .|....|.|              |.:..||                  
  Rat   270 FSSPN---YPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTGYGDYVKIYDGLEENPRKLLRV 331

  Fly  1262 ----------------------FCAEKTCAY--FQFTCPRTGHCIPQSWVCDGDDDCFDKQDEKD 1302
                                  |||:|..|.  |..|....|.|:|....|.|:..|:.:|.   
  Rat   332 LTAFDSHAPLTVVSSSGQIRVHFCADKVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQ--- 393

  Fly  1303 CPPISCLANQFKCADLRQCVEESYKCDGIPDCNDGSDEVGCPSMGPNQCNLEKHFRCKSTGFCIP 1367
                                    :|||...|.:|.||:.|     ..|..|: |.|...|.|.|
  Rat   394 ------------------------RCDGYWHCPNGRDEINC-----TMCQKEE-FPCSRNGVCYP 428

  Fly  1368 IAWHCDGSNDCSDHSDEQDCGQITCAQNFFKCNNTNCVFKAYICDGKDDCGDNSDEGAEHACVP 1431
            .:..|:..|.|.:.|||::|  ..|....|.|.|..|||::::||.:|||||.|||.:....||
  Rat   429 RSDRCNYQNHCPNGSDEKNC--FFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEESCPVIVP 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mglNP_001096924.2 LDLa 157..189 CDD:238060
LDLa 204..236 CDD:238060
LDLa 292..327 CDD:238060
LDLa 332..366 CDD:238060
LDLa 371..412 CDD:238060
vWFA <447..488 CDD:294047
NHL 573..>716 CDD:302697
NHL repeat 573..610 CDD:271320
NHL repeat 616..654 CDD:271320
NHL repeat 657..693 CDD:271320
FXa_inhibition 763..805 CDD:291342
LY 922..964 CDD:214531
LY 973..1007 CDD:214531
Ldl_recept_a 1188..1223 CDD:278486 16/45 (36%)
LDLa 1227..1259 CDD:197566 10/55 (18%)
LDLa 1268..1303 CDD:238060 10/36 (28%)
LDLa 1308..1343 CDD:238060 7/34 (21%)
LDLa 1356..1387 CDD:238060 11/30 (37%)
LDLa 1391..1423 CDD:197566 15/31 (48%)
LDLa 1435..1469 CDD:197566
FXa_inhibition 1478..1513 CDD:291342
FXa_inhibition 1522..1553 CDD:291342
LY 1625..1665 CDD:214531
LY 1667..1711 CDD:214531
Ldl_recept_b 1690..1728 CDD:278487
LY 1712..1754 CDD:214531
LY 1986..2037 CDD:214531
FXa_inhibition 2151..>2179 CDD:291342
LY 2259..2305 CDD:214531
Ldl_recept_b 2326..2366 CDD:278487
LY 2352..2392 CDD:214531
NHL 2579..>2711 CDD:302697
NHL repeat 2593..2622 CDD:271320
NHL repeat 2634..2678 CDD:271320
LY 2671..2713 CDD:214531
LDLa 2867..2901 CDD:238060
LDLa 2906..2941 CDD:238060
LDLa 2950..2983 CDD:238060
LDLa 3034..3066 CDD:197566
LDLa 3080..3115 CDD:197566
LDLa 3128..3159 CDD:238060
LDLa 3170..3204 CDD:238060
LDLa 3210..3242 CDD:197566
cEGF 3269..3292 CDD:289433
vWFA <3284..3324 CDD:294047
LY 3362..3394 CDD:214531
LY 3406..3448 CDD:214531
LY 3498..3536 CDD:214531
LY 3536..3578 CDD:214531
FXa_inhibition 3607..3659 CDD:291342
LDLa 3663..3696 CDD:238060
LDLa 3705..3739 CDD:238060
LDLa 3743..3775 CDD:197566
LDLa 3784..3817 CDD:197566
LDLa 3827..3861 CDD:197566
LDLa 3871..3901 CDD:197566
LDLa 3913..3947 CDD:238060
LDLa 3952..3986 CDD:238060
LDLa 3996..4027 CDD:197566
LDLa 4043..4071 CDD:238060
LDLa 4086..4117 CDD:238060
EGF_CA 4163..4194 CDD:214542
NHL 4276..>4426 CDD:302697
NHL repeat 4291..4336 CDD:271320
Ldl_recept_b 4350..4390 CDD:278487
NHL repeat 4376..4422 CDD:271320
Lrp12NP_001128355.1 CUB 47..158 CDD:238001 4/14 (29%)
LDLa 166..200 CDD:238060 16/36 (44%)
LDLa 215..254 CDD:238060 15/38 (39%)
CUB 267..371 CDD:238001 16/106 (15%)
LDLa 375..410 CDD:238060 13/61 (21%)
LDLa 413..448 CDD:238060 13/35 (37%)
LDLa 451..485 CDD:238060 17/33 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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