DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pif1A and jakmip1

DIOPT Version :9

Sequence 1:NP_001189195.2 Gene:Pif1A / 8674049 FlyBaseID:FBgn0261015 Length:1264 Species:Drosophila melanogaster
Sequence 2:XP_009289287.1 Gene:jakmip1 / 555987 ZFINID:ZDB-GENE-110208-7 Length:824 Species:Danio rerio


Alignment Length:956 Identity:197/956 - (20%)
Similarity:352/956 - (36%) Gaps:333/956 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 VTTTNVIAAPPQRIKRKLQENMDTIQKLNALTEQLRLEVNELKSSLITERGAV-------RALRA 194
            :..|...:|||.:..|..|| |:|:|..|   |:|:..::::::.|..|||.:       :.|||
Zfish     1 MAATTPTSAPPPKKSRGKQE-METLQTAN---EELKSRLSDVQNELQQERGKMTKLRERFQELRA 61

  Fly   195 QNDADSRRWKSEVKKL---------------------QHTLEMAKK------------------- 219
            |.:.:..:....:.:|                     ||..|:|:.                   
Zfish    62 QRETEQHKHSVALSELRVKLHEEKQREVAAARESLSRQHEAELARSARVRETELARLQALVCVLR 126

  Fly   220 ---SNGIKKAI-ESGPESSGAHVTADGLINYEIQRLTNEIAVLKEANRNKEEKTQIMGQADRLKA 280
               |:.::.|: |...|.:.....|:.|      |||.|:...|.:.|..||......||||.||
Zfish   127 DGASSELRNALKEEAREEARRSYEAEKL------RLTQELQEAKTSRRQAEEALAHAVQADRAKA 185

  Fly   281 ADMRQLKNAYENRLTHIQKSAKIEITRLLEEIKTKERNIGQLRKDL--LALQSPKKLKQNEAKVP 343
            ||:|....|:::.:..|::.::.||.||::|:|:::|.:..|.|:|  .|.|:.:.|.|.|    
Zfish   186 ADLRVAHQAHQDEIQRIKRESEREIRRLMDELKSRDRVVQSLEKELGVQAGQTQRLLLQKE---- 246

  Fly   344 ATTKPKTNPNETSQKPKKPTTKAAGETKAKTEPDTDTDIS---EQNPIRQAQVTPEITQLKNI-- 403
                 ::..|..|  ||:....:.||       ::|:.|:   ::..:|:.|:  :|.:|:::  
Zfish   247 -----ESERNYGS--PKREVVPSLGE-------NSDSVINQEVDERDVRRFQL--KIAELQSVIR 295

  Fly   404 --------------ELINNTKNA--------------HKSALEMRTTMKSSQPNGLDDAPTRMRA 440
                          ||:...:.|              :|...|::.|::..:    |...|..|.
Zfish   296 KLEDRNTLLSDERNELLKRVREAEGEMKPLFEKNKRLNKKNEELQQTLQRME----DKLKTLSRE 356

  Fly   441 PDEMRATTWMTTLVGS-NCH------SHSHSHPAV---------------------------AKS 471
            ..|.|..:..::..|. ..|      |.:|....|                           .|:
Zfish   357 NAEQREKSQQSSQSGGLKRHTSLTDLSQAHEQQEVEYLRLQISEQRGVIDELTQERDRLIINKKN 421

  Fly   472 KDPN---------------------SDTDSALS--SAPPSISPQPPSSGSDSGVI---------- 503
            :..|                     |:|.|..|  :.....:|..|....:.|..          
Zfish   422 RRKNIKLPKRHVVETYFGFDEESVDSETSSLTSYNTDRTDYTPATPEEDLEDGFSREEAELRFRQ 486

  Fly   504 ----WQTLQDLDKLQKEA------EMYQKENERLQTEV-----QLMKQELDAAEKAAISR--AKK 551
                :|.||....|.:|.      |.:.:..|:||||:     ::...|...|||...|:  .:|
Zfish   487 LTREYQALQRAYALLQETTGPLDPERHCRTREQLQTELIGCQARIADLERSLAEKGQDSKWVEEK 551

  Fly   552 QAQI---GELMQRIKELEEMQSSLEDEASELREQNELLEFRILELED------------DSDKME 601
            |..|   .||.::|..||:.:..|..|..:..:|||||||||||||:            .:.:..
Zfish   552 QNLIRINQELREKIVSLEQCEIRLRSEVRDTLDQNELLEFRILELEERERRSPAFNLQISASENN 616

  Fly   602 STCEGHCQ--SLQDLLEQSAQRLEDRDKRCLQQLLQCVQQLDLDTMMPGDQNRTETPKRHNSTHS 664
            |:.:.|||  .::|::      :.|..|:             ||.:  ||               
Zfish   617 SSLQLHCQQEGVKDVI------IPDLMKK-------------LDIL--GD--------------- 645

  Fly   665 HSHSHSHSQSHNHRIVATVQP---YSNCATPTAPPTPSKRHCNQVSSWQSSSLSESGVFVECDLL 726
                  :....|...|..:|.   .|.|          ::...|:.|.: ::|::..:.:|    
Zfish   646 ------NGNLRNEEQVTVIQAGTVLSLC----------EKWLKQIDSTE-AALTQKMIDLE---- 689

  Fly   727 SNPNPIGHPHLQFYQERLEQLEGKLLIYESSGETQARHLAQRLQRELQLEKDL---KELADRVEL 788
             |...:......|.:|.|:..:..|    ...:.:.:.|...|...||.:.|.   :.|:||   
Zfish   690 -NEKELFSKQKGFLEEELDYRKQAL----DHAQLRVQELEATLYAALQQDPDSCVGESLSDR--- 746

  Fly   789 LIEQNAQLEEAKCEFEEAENDTRLHLQRNEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILR 853
               |.|:|.|:                .:.|..:||||..                 .|:.|:|:
Zfish   747 ---QRAKLAES----------------MDAVRRQILRQSR-----------------HADTLVLQ 775

  Fly   854 ---EDLAAAETQLEHLQAERKQARKELQDLRRSLPLLLIFRLLSLA 896
               |.|.:|:.::..|:.:....|::::::...  .|.:|...|||
Zfish   776 QRMELLQSAQQRIRELEDKIDMQRRQIKEIEEK--FLFLFLFFSLA 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pif1ANP_001189195.2 JAKMIP_CC3 <156..282 CDD:292653 40/176 (23%)
JAKMIP_CC3 <516..595 CDD:292653 34/94 (36%)
jakmip1XP_009289287.1 SMC_N 29..>372 CDD:330553 78/372 (21%)
JAKMIP_CC3 411..607 CDD:318290 48/195 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002005
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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