DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pif1A and Jakmip1

DIOPT Version :9

Sequence 1:NP_001189195.2 Gene:Pif1A / 8674049 FlyBaseID:FBgn0261015 Length:1264 Species:Drosophila melanogaster
Sequence 2:XP_017454687.1 Gene:Jakmip1 / 305434 RGDID:1562401 Length:868 Species:Rattus norvegicus


Alignment Length:1180 Identity:247/1180 - (20%)
Similarity:427/1180 - (36%) Gaps:373/1180 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 MAKNKLKRKKKLSSSLTSVGDTVNQEKRTRIEGIQLHCRGKLRPKETQSFEAEKGPSAGSQKQLG 122
            |:|....:.:|..:...|| ...|:|.|.::..||:            .|:.||......:::|.
  Rat     1 MSKKGRSKGEKPETETDSV-QMANEELRAKLTNIQI------------EFQQEKSKVGKLRERLQ 52

  Fly   123 KAEKDRERPVIIGGVTTTNVIAAPPQRIKRKLQENMDTIQKLNA-LTEQLRLEVNELKSSLIT-- 184
            :|:.:||                      ::.:.:...|.:|.| |.|:...|:..|:.:||.  
  Rat    53 EAKLERE----------------------QEQRRHTAYISELKAKLHEEKTKELQALREALIRQH 95

  Fly   185 ERGAVRALRAQNDADSRRWKSEVKKLQHTLEMAK--KSNGIKKAIESGPESSGAHVTADGLINYE 247
            |:.|.|..:.:        :.|:::||.||.:.:  .::.:|.|:.:..... |..|.||    |
  Rat    96 EQEAARTAKIK--------EGELQRLQATLNVLRDGAADKVKTALLADAREE-ARRTFDG----E 147

  Fly   248 IQRLTNEIAVLKEANRNKEEKTQIMGQADRLKAADMRQLKNAYENRLTHIQKSAKIEITRLLEEI 312
            .|||..||..||.|.:..||......|||:.||||:|....|:::.:..|::..:.:|.||::||
  Rat   148 RQRLQQEILELKAARKQAEEALSNCMQADKAKAADLRAAYQAHQDEVHRIKRECERDIRRLMDEI 212

  Fly   313 KTKERNIGQLRKDL--LALQSPKKLKQNEAKVPATTKPKTNPNETSQKPKKPTTKAAGETKAKTE 375
            |.|||.|..|.|:|  .|.|:.:.|.|.||                                   
  Rat   213 KGKERVILALEKELGVQAGQTQRLLLQKEA----------------------------------- 242

  Fly   376 PDTDTDISEQNPIRQAQVTPEITQLKNIELINNTKNAHKSALEMRTTMKSSQPNGLDDAPTRMRA 440
                  :.||           :.|:|..|       .|.|      :.|...|.|:.|       
  Rat   243 ------LDEQ-----------LVQVKEAE-------RHHS------SPKRELPPGIGD------- 270

  Fly   441 PDEMRATTWMTTLVGSNCHSHSHSHPAVAKSKDPNSDTDSALSSAPPSISPQPPSSGSDSGVIWQ 505
                     |..|:|                                         |.|      
  Rat   271 ---------MAELMG-----------------------------------------GQD------ 279

  Fly   506 TLQDLDKLQKEAEMYQKENERLQTEVQLMKQELDAAEKAAISRAKKQAQIGELMQRIKELEEMQS 570
              |.:|         :::..|.                        |.:|.||...|::||:..:
  Rat   280 --QHMD---------ERDVRRF------------------------QLKIAELNSVIRKLEDRNT 309

  Fly   571 SLEDEASELREQNELLEFRILELEDDSDKMESTCEGHCQSLQDLLEQSAQRLEDRDKRCLQQLLQ 635
            .|.||.:||.:::...|.::..|.:.:.:|....|       ||| .|.||:|::.|...::.::
  Rat   310 LLADERNELLKRSRETEVQLKPLVEKNKRMNKKNE-------DLL-HSIQRMEEKLKSLTRENVE 366

  Fly   636 CVQQLDLDTMMPGDQNRTETPKRHNSTHSHSHSHSHSQSHNHRIVATVQPY--SNCATPTAPPTP 698
            ..::|.....:          |||.|.:..|.:....:....|:....|.:  .:.:........
  Rat   367 MKEKLSAQASL----------KRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLR 421

  Fly   699 SKRHCNQVSSWQSSSLSESGVFVECDLLSNPNPIGHPHLQFYQERLEQLEGKLLIYES------- 756
            ||||       :..||..              |..|....|:....|.::.:.|...|       
  Rat   422 SKRH-------RGKSLKP--------------PKKHVVETFFGFDEESVDSETLSETSYNTDRTD 465

  Fly   757 -SGETQARHLAQRLQRELQLEKDLK--ELADRVELLIEQNAQLEEAKCEFEEAENDTRLHLQRNE 818
             :..|....|.:...||   |.||:  :|....:.|....|.|:|......:||.:.|   .|.:
  Rat   466 RTPATPEEDLDETTTRE---EADLRFCQLTREYQALQRAYALLQEQVGGTLDAEREAR---TREQ 524

  Fly   819 VELEILR-QRNVE------LEFGKEALGAKYQDCRAEVLI-LREDLAAAETQLEHLQAERKQARK 875
            ::.::|| |..:|      :|.|::|...:    ..:||: ..:||.   .::..|:.|..|.:.
  Rat   525 LQADLLRCQAKIEDLEKLLVEKGQDAAWVE----EKQVLMRTNQDLL---EKIYRLEMEENQLKS 582

  Fly   876 ELQDLRRSLPLLLIFRLLSLAKMGNEESSPGGSPRL-------SSGYTSSIHQDRDFSAKIQTTE 933
            |:||.:.... ||.||:|.|.:  .|..||..:.::       ||......||:......|....
  Rat   583 EMQDAKDQNE-LLEFRVLELEE--RERRSPAFNLQITTFPENNSSALQLFCHQEGVKGVNISELM 644

  Fly   934 FDLGQAGFTDSGEEREIVYLKEEVKSLRS----QLKELNARHYEAMETA-DSHWVDLEQQYKERE 993
            .:|...|  |:|..|.    :|:|..:::    .|.|...:..|..|.| ....:|||   ||::
  Rat   645 KNLDILG--DNGNLRN----EEQVAVIQAGTVLALCEKWLKQIEGTEAALTQKMMDLE---KEKD 700

  Fly   994 EAQQAKEASLKQKIAQLQDCLREDSRAATEKIQQLEEGELSLKSCLVRMTKEHRDLLTENRTLQC 1058
            :..:.| ..|:|::...::.|.:......||||.||                        .||..
  Rat   701 QFSRQK-GYLEQELDYRKEALDQAYLVGPEKIQDLE------------------------ATLYN 740

  Fly  1059 SLESLMAKMEKE---AEHKMPLTEALENERRKTQALMDDLIFAKKVQQNTEDQLRQETDALRTQI 1120
            :|:....:...|   |..:..|..|:|..||                     ||.:::....:||
  Rat   741 ALQQEPGRRASESLSASQREDLQAAVEKVRR---------------------QLLRQSREFDSQI 784

  Fly  1121 FNIKKDYLHIEVTNGELKEEVGTLENKIRQMENQMRDSEER-ARC-LEDE--LRTKDEQCQLLER 1181
            ...:.:.|.      :.::::..:|.|:.....|:::.||: :.| |||.  .||:..|......
  Rat   785 LRERMELLQ------QAQQKIREMEGKLELQRRQLKELEEKHSFCGLEDSHAPRTRARQRISGIT 843

  Fly  1182 KLGVMPEGYS 1191
            ::.|:|..:|
  Rat   844 RVPVVPHPHS 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pif1ANP_001189195.2 JAKMIP_CC3 <156..282 CDD:292653 39/130 (30%)
JAKMIP_CC3 <516..595 CDD:292653 15/78 (19%)
Jakmip1XP_017454687.1 SMC_prok_A <6..363 CDD:274009 121/575 (21%)
JAKMIP_CC3 416..612 CDD:406442 54/232 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002005
OrthoInspector 1 1.000 - - oto98184
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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