DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pif1A and jakmip2

DIOPT Version :9

Sequence 1:NP_001189195.2 Gene:Pif1A / 8674049 FlyBaseID:FBgn0261015 Length:1264 Species:Drosophila melanogaster
Sequence 2:XP_002936754.2 Gene:jakmip2 / 100490604 XenbaseID:XB-GENE-6039514 Length:820 Species:Xenopus tropicalis


Alignment Length:993 Identity:216/993 - (21%)
Similarity:362/993 - (36%) Gaps:339/993 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 KNKLKRKKKLSSSLTSVGDTVNQEKRTRIEGIQLHCRGKLRPKETQSFEAEKGPSAGSQKQLGKA 124
            :||.::.:.|..:|    ...|::.|.::..||:....:  ..:....|.||...:   |::.:.
 Frog     6 RNKAEKPEALLLAL----QAANEDLRAKLTDIQIELHQE--KSKVSKLEREKNQES---KRIKEQ 61

  Fly   125 EKDRERPVIIGGVTTTNVIAAPPQRIKRKLQENMDTIQKLNALTEQLRLEVNELKSSLITERGAV 189
            |:.|..      ||.|        .:|.||.|  :.:::|.|:.|.|..:..:..|.::..:   
 Frog    62 EQHRHT------VTVT--------ELKSKLHE--EKMKELQAVRENLIKQHEQEMSRMVKLK--- 107

  Fly   190 RALRAQNDADSRRWKSEVKKLQHTLEMAKKSNGIKKAIESGPESSGAHVTADGLINYEIQRLTNE 254
                   :|:..|.||.|..|:.     ..|:.|:.|:     |:.|...|..:.:.|..:|..|
 Frog   108 -------EAEILRLKSTVNALRD-----GSSDKIRTAL-----STEAREEARKVFDSERLKLLQE 155

  Fly   255 IAVLKEANRNKEEKTQIMGQADRLKAADMRQLKNAYENRLTHIQKSAKIEITRLLEEIKTKERNI 319
            |..||.|.:..:|....|.|||::||.|:|....:::..:..|:..::.:|.||::|||.|:|.|
 Frog   156 ITELKSAKKQVDEALNNMIQADKIKAGDLRSEHQSHQEAIAKIKWESERDIRRLMDEIKAKDRII 220

  Fly   320 GQLRKDL---------LALQ-------------------SPKK-----------------LKQNE 339
            ..|.|:|         |.||                   |||:                 |::|:
 Frog   221 FSLEKELETQTGFVQKLQLQKEALDEQLFLVKEAECNVGSPKREIPGRAGDGSEHCGSPDLRRNQ 285

  Fly   340 ---AKVPATTKPKTNPN-----------------ETSQKP----KKPTTKAAG---------ETK 371
               |::.||.:...:.|                 |...||    .|..||...         |.|
 Frog   286 KRIAELNATIRKLEDRNTLLVDERNELLRRVREAEKQCKPLLEKNKCLTKRNDELMQSLQRMEEK 350

  Fly   372 AKTEPDTDTDISEQNPIRQAQVTPEITQ---LKNIELINNTKNA-HKSALEMRTTMKSSQPNGLD 432
            .||       |:.:|    |::..:||.   ||.:..:|:...| .:..:|........|.|.:|
 Frog   351 LKT-------ITREN----AEMREKITSHPPLKKLRSLNDLDQAEEEQEIEFLKLQVIEQQNIID 404

  Fly   433 DAPTRMRAPDEMRATTWMTTLVGSNCHSHS------HSHPAVAKSKDPNSDTD-SALSSAPPSIS 490
            |. ||.|           ..|:....|..|      |....|....|.:.|:: |:::|.....:
 Frog   405 DL-TRDR-----------EKLIRRKKHKRSSKPIKRHLVDTVFGYDDDSMDSETSSVASYRTDRT 457

  Fly   491 PQPPSSGSDSGVI--------------WQTLQDLDKLQKE-------AEMYQKENERLQTEVQLM 534
            |..|....|..:.              :|.||....|.:|       ||...|..|::||||...
 Frog   458 PATPDDDLDENLAAEESELRFRQLTKEYQALQRAYALLQEHTGGFTDAEREAKAQEQMQTEVLRY 522

  Fly   535 KQELDAAEKAAISRA-------KKQAQI---GELMQRIKELEEMQSSLEDEASELREQNELLEFR 589
            |.:::..||....:.       :||..|   .||:.||:.||...|.|:.|..:.|:||||||||
 Frog   523 KAKVEDLEKTLAQKGQDSHWVDEKQLFIKRNQELLDRIERLESENSRLQQELQDSRDQNELLEFR 587

  Fly   590 ILELEDDSDKME-------------STCEGHCQ-------SLQDLLEQSAQRLEDRDKRCLQQLL 634
            .||||:...:..             |..:.:|.       |:.||::|                 
 Frog   588 NLELEERERRSPPFNLQIHPFADGVSALQIYCMKEGVKDVSIPDLIKQ----------------- 635

  Fly   635 QCVQQLDLDTMMPGDQNRTETPKRHNSTHSHSHSHSHSQSHNHRIVATVQPYSNCATPTAPPTPS 699
                   ||.:  ||..                                               :
 Frog   636 -------LDIL--GDNG-----------------------------------------------N 644

  Fly   700 KRHCNQVSSWQSSSLSESGVFVECDLLSNPNPIGHPHLQFYQERLEQLEG-------KLLIYESS 757
            .|:..||:..|:|::                      |...::.::|:||       |::..||.
 Frog   645 LRNEEQVAIIQASTV----------------------LSLAEKWIQQIEGAEAALHRKMMELESD 687

  Fly   758 GETQARHLAQRLQRELQLEKDLKELADRVELLIEQ------NAQLEEAKCEFEEAENDTRLHLQR 816
            .| |...|...|:.||...   |:..|:..:.|::      ||..::...:|.|..||.    |:
 Frog   688 ME-QFCKLKGYLEEELDYR---KQALDQAYMRIQELEATLYNALQQDTVIKFGELLNDK----QQ 744

  Fly   817 NEVELEILRQRNVELEFGKEALGAKYQDCRAEVLILRED---LAAAETQLEHLQAERKQARKELQ 878
            :|:.:.:.:.|...|...:|.      ||:    ||:|.   |..|..::..|:.:....:::::
 Frog   745 DELRMAVEKLRRQMLRKSREF------DCQ----ILQERMELLHQAHQRIRDLEDKTDIQKRQIK 799

  Fly   879 DLRRSLPLLLIFRLLSLA 896
            ||...  .|.:|...|||
 Frog   800 DLEEK--FLFLFLFFSLA 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pif1ANP_001189195.2 JAKMIP_CC3 <156..282 CDD:292653 32/125 (26%)
JAKMIP_CC3 <516..595 CDD:292653 36/95 (38%)
jakmip2XP_002936754.2 SMC_prok_B 23..803 CDD:274008 207/956 (22%)
JAKMIP_CC3 409..602 CDD:374316 54/203 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002005
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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