DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr21 and Sdk2

DIOPT Version :9

Sequence 1:NP_001163838.2 Gene:dpr21 / 8674044 FlyBaseID:FBgn0260995 Length:282 Species:Drosophila melanogaster
Sequence 2:XP_006247755.1 Gene:Sdk2 / 360652 RGDID:1310397 Length:2175 Species:Rattus norvegicus


Alignment Length:245 Identity:64/245 - (26%)
Similarity:100/245 - (40%) Gaps:57/245 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 FRENVTVT------------DLYLISENIVPMKR-----VLDRGPYFDTSATKNVTSLVGITGHL 71
            :...:|:|            :..|.|.::.|:.|     ||: .|.|.....:::|:.:.....:
  Rat   268 YNRRLTITNPMVSDAGYYECEAMLRSSSVAPVTRGAYLSVLE-PPQFVREPERHITAEMEKVVDI 331

  Fly    72 NCRIKNLGNKTVSWIRHRDLHLLTVSESTYTSDQRFTSIYNKQTGDWSLQIKFPQLRDSGIYEC- 135
            .||.|.:...:::|  ::|..|:.|.:.|     ||     ||..|..|||......|:|:.:| 
  Rat   332 PCRAKGVPPPSITW--YKDAALVEVGKLT-----RF-----KQRSDGGLQISGLLPDDTGMVQCF 384

  Fly   136 --------QVSTTPPVGYTMVFSVVEPITSILGGP--EIYIDLGSTVNLTCVIKHLPDPPISVQW 190
                    |.||     |..|.|:...||.   ||  ...|| |.:|.|.|.....|.|.|:  |
  Rat   385 AHNAAGEAQTST-----YLAVTSIAPNITR---GPLDSTVID-GMSVVLACETSGAPRPAIT--W 438

  Fly   191 NHNNQEINYDSPRGGVSVITEKGDITTSYLLIQRASIADSGQYTCLPSNA 240
            ....:.:...|.:.....:.|.|.     |||....|:|:|.||||.:|:
  Rat   439 QKGERILASGSVQLPRFTLLESGS-----LLISPTHISDAGTYTCLATNS 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr21NP_001163838.2 Ig 71..149 CDD:299845 23/86 (27%)
IG_like 71..140 CDD:214653 21/77 (27%)
IG_like 162..249 CDD:214653 25/81 (31%)
IGc2 169..242 CDD:197706 22/72 (31%)
Sdk2XP_006247755.1 IG_like 43..112 CDD:214653
IGc2 43..101 CDD:197706
IG_like 123..206 CDD:214653
Ig 135..191 CDD:299845
IG_like 225..307 CDD:214653 6/38 (16%)
IGc2 236..289 CDD:197706 2/20 (10%)
I-set 311..400 CDD:254352 26/105 (25%)
Ig 329..397 CDD:143165 22/84 (26%)
I-set 405..495 CDD:254352 28/90 (31%)
Ig 419..495 CDD:299845 22/72 (31%)
Ig 505..589 CDD:299845
IG_like 505..589 CDD:214653
FN3 593..684 CDD:238020
FN3 696..789 CDD:238020
FN3 797..893 CDD:238020
FN3 898..986 CDD:238020
FN3 996..1090 CDD:238020
FN3 1102..1197 CDD:238020
FN3 1204..1293 CDD:238020
FN3 1304..1397 CDD:238020
FN3 1403..1487 CDD:238020
FN3 1506..1619 CDD:238020
FN3 1629..1722 CDD:238020
FN3 1727..1808 CDD:238020
FN3 1840..1919 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.