DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42542 and GDT1

DIOPT Version :9

Sequence 1:NP_001163614.1 Gene:CG42542 / 8674000 FlyBaseID:FBgn0260659 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_009746.1 Gene:GDT1 / 852485 SGDID:S000000391 Length:280 Species:Saccharomyces cerevisiae


Alignment Length:469 Identity:110/469 - (23%)
Similarity:171/469 - (36%) Gaps:213/469 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LALMVVLTFGTICAAEAQPDSADNAVIESGIQSNLDVQGDLNRPTDLSSLAEKPKDAADRPKTKG 92
            :||:.:.|.....|.:|:..      :|||..|:|                              
Yeast    11 IALLPLFTAAAAAATDAETS------MESGSSSHL------------------------------ 39

  Fly    93 TFIDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIAALALMTVLSCAFG-MAANFIP 156
               .:|..|:|:|.|:|:|||||.|||:|||||.|::||..|..:||:||:||...| .|..|:.
Yeast    40 ---KSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLS 101

  Fly   157 KIYTYYISTALFLIFGLKMLYDGYKM-KPTDAQEELEEVQTDLRKREDELLRKASRKYEDAEGKR 220
            :.||.:.:..|||:||.|:..:|.:| |....:||:.||:.::                    ..
Yeast   102 ERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEI--------------------AI 146

  Fly   221 KNSNSDKEDASEQALIHGRNSISTAAGSTTDMQHRQRKQRNHLNNNNSKQNSCDKTGNDDDDRDQ 285
            |:.|.|.:|.                                           :|.|:...|:..
Yeast   147 KDMNQDMDDV-------------------------------------------EKGGDTAYDKQL 168

  Fly   286 HESEVFLKEGGRIVEQLK-LKTFPSSPAHSAASSNQTEQTNSIAASTATVDVQLAGHPTDPSVGG 349
            ..:.:    |.:||.::: |.:|..||                                      
Yeast   169 KNASI----GKKIVHRIRELASFMFSP-------------------------------------- 191

  Fly   350 ASEPRAPLAGHDSMHSLNGSLNGESGPVNGALKARLDRDVNAALVNDAESGRRRPQKRGATYFTM 414
                                                                             
Yeast   192 ----------------------------------------------------------------- 191

  Fly   415 RILAQAFTMTFLAEWGDRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRT 479
             :..|.|.|.||.|.|||||::.|.:|...|.:.||||.:|||.||:||||:||:|:|::||:||
Yeast   192 -VWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRT 255

  Fly   480 VTIVGGIVFIGFAI 493
            :|:...::|..||:
Yeast   256 ITLASSLLFFIFAL 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42542NP_001163614.1 Gdt1 97..>183 CDD:225030 42/87 (48%)
UPF0016 104..172 CDD:279508 34/68 (50%)
Gdt1 <416..496 CDD:225030 39/78 (50%)
UPF0016 423..492 CDD:279508 35/68 (51%)
GDT1NP_009746.1 Gdt1 39..280 CDD:225030 101/435 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346828
Domainoid 1 1.000 87 1.000 Domainoid score I1848
eggNOG 1 0.900 - - E1_COG2119
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5411
Inparanoid 1 1.050 180 1.000 Inparanoid score I963
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002397
OrthoInspector 1 1.000 - - oto99728
orthoMCL 1 0.900 - - OOG6_101338
Panther 1 1.100 - - LDO PTHR12608
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2127
SonicParanoid 1 1.000 - - X2098
TreeFam 1 0.960 - -
1413.780

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