DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42542 and AT1G68650

DIOPT Version :9

Sequence 1:NP_001163614.1 Gene:CG42542 / 8674000 FlyBaseID:FBgn0260659 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_177032.1 Gene:AT1G68650 / 843195 AraportID:AT1G68650 Length:228 Species:Arabidopsis thaliana


Alignment Length:411 Identity:104/411 - (25%)
Similarity:152/411 - (36%) Gaps:186/411 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 GTFIDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIAALALMTVLSCAFGMAA-NFI 155
            |:.:..||.|:::..|:|:||||||.|||:|||:||.:|..|.::||.:||:||...|.|| |.|
plant     2 GSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAPNLI 66

  Fly   156 PKIYTYYISTALFLIFGLKMLYDGYKMKPTDAQEELEEVQTDLRKREDELLRKASRKYEDAEGKR 220
            .:.:|::|:|.||..|||..|:||:  |.....|||.||:.:|                |::.|:
plant    67 SRKWTHHITTFLFFGFGLWSLWDGF--KEGGGSEELAEVEAEL----------------DSDLKK 113

  Fly   221 KNSNSDKEDASEQALIHGRNSISTAAGSTTDMQHRQRKQRNHLNNNNSKQNSCDKTGNDDDDRDQ 285
            .|..|                                        .|||                
plant   114 TNDQS----------------------------------------KNSK---------------- 122

  Fly   286 HESEVFLKEGGRIVEQLKLKTFPSSPAHSAASSNQTEQTNSIAASTATVDVQLAGHPTDPSVGGA 350
                                                                             
plant   123 ----------------------------------------------------------------- 122

  Fly   351 SEPRAPLAGHDSMHSLNGSLNGESGPVNGALKARLDRDVNAALVNDAESGRRRPQKRGATYFTMR 415
                                                       :.|.:..::||   ..|.|...
plant   123 -------------------------------------------IEDEQKKQKRP---FLTAFFSP 141

  Fly   416 ILAQAFTMTFLAEWGDRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRTV 480
            |..:||::.|..||||:|||.||.|||.::..||:.|||:...:||..||:||:.:||:||.|.|
plant   142 IFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVAQTLCTTAAVLGGKSLASQISERIV 206

  Fly   481 TIVGGIVFIGFAIYAVAIPPD 501
            .:.||::||.|.|.::..|.|
plant   207 ALSGGMLFIIFGIQSLLTPVD 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42542NP_001163614.1 Gdt1 97..>183 CDD:225030 43/86 (50%)
UPF0016 104..172 CDD:279508 34/68 (50%)
Gdt1 <416..496 CDD:225030 39/79 (49%)
UPF0016 423..492 CDD:279508 34/68 (50%)
AT1G68650NP_177032.1 Gdt1 5..228 CDD:225030 103/408 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 75 1.000 Domainoid score I3189
eggNOG 1 0.900 - - E1_COG2119
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D919566at2759
OrthoFinder 1 1.000 - - FOG0002397
OrthoInspector 1 1.000 - - otm3091
orthoMCL 1 0.900 - - OOG6_101338
Panther 1 1.100 - - O PTHR12608
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2098
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.780

Return to query results.
Submit another query.