DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42542 and gdt1

DIOPT Version :10

Sequence 1:NP_001163614.1 Gene:CG42542 / 8674000 FlyBaseID:FBgn0260659 Length:503 Species:Drosophila melanogaster
Sequence 2:NP_595023.1 Gene:gdt1 / 2542574 PomBaseID:SPAC186.05C Length:262 Species:Schizosaccharomyces pombe


Alignment Length:433 Identity:99/433 - (22%)
Similarity:154/433 - (35%) Gaps:180/433 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 LDVQGDLNRPTDLSSLAEKPKDAADRPKTKGTFIDAFTASISVILLTELGDKTFFIAAIMAMRHP 126
            ::|:..||..|.|.||          ..:.|: :.....|||:|:..|||||:|.:.|::|.::.
pombe     2 INVESPLNLETTLGSL----------QFSHGS-VQNIGMSISMIIGCELGDKSFIVTALLAYQYG 55

  Fly   127 RLIVFGGAIAALALMTVLSCAFGMAANFI-PKIYTYYISTALFLIFGLKMLYDGYKMKPTDAQEE 190
            |..||.|:..||..||..:...|.||.|: ||..|:.:...||||||:|||            :|
pombe    56 RASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKML------------KE 108

  Fly   191 LEEVQTDLRKREDELLRKASRKYEDAEGKRKNSNSDKEDASEQALIHGRNSISTAAGSTTDMQHR 255
            .:||      ||                            |:|:|                    
pombe   109 SKEV------RE----------------------------SQQSL-------------------- 119

  Fly   256 QRKQRNHLNNNNSKQNSCDKTGNDDDDRDQHESEVFLKEGGRIVEQLKLKTFPSSPAHSAASSNQ 320
                          :|..||.           .::.:.|     |.:|.......||.:.:||..
pombe   120 --------------ENEFDKV-----------EKIIVNE-----EDMKKTLELGLPASNRSSSTL 154

  Fly   321 TEQTNSIAASTATVDVQLAGHPTDPSVGGASEPRAPLAGHDSMHSLNGSLNGESGPVNGALKARL 385
            .::...:.:.:                                                ..|...
pombe   155 KDKFFKVFSMS------------------------------------------------CFKNLF 171

  Fly   386 DRDVNAALVNDAESGRRRPQKRGATYFTMRILAQAFTMTFLAEWGDRSQLTTIILAASKDVYGVI 450
            .:..:.|.:                        :||.:.|::|.|||||:.||:::|.:.|..|.
pombe   172 SKKFSRAFI------------------------KAFALIFVSELGDRSQIATIVMSAKEKVLDVF 212

  Fly   451 AGGIIGHCICTGLAVIGGRLVASKISVRTVTIVGGIVFIGFAI 493
            .|..|||.:||.:|||.||.:::||.:..|...|||||:.|.|
pombe   213 IGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGIVFMIFGI 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42542NP_001163614.1 UPF0016 99..172 CDD:460096 31/73 (42%)
UPF0016 419..492 CDD:460096 33/72 (46%)
gdt1NP_595023.1 Gdt1 38..262 CDD:441722 87/386 (23%)

Return to query results.
Submit another query.