DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and grik2

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:727 Identity:142/727 - (19%)
Similarity:255/727 - (35%) Gaps:205/727 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 NLIHMAKLSHVLILHCSLSHLALL-----AQSK-NIFTQFQPLHSDIQLNDDFLNHNILKLG--- 66
            :|:|..|...|.:::...:.|..|     |.|: ||..:.:.|.:|.:.....|..  :|.|   
Zfish   162 DLVHFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNIRLKIRQLPADTKDAKPLLKE--MKRGKEF 224

  Fly    67 -VFLDINCDKSGTVLDMASAKRFFSHRYHWLI---------------------------YDRSMN 103
             |..|...:.:..:|..|.|....:..||::.                           .:.|..
Zfish   225 HVIFDCGHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENSQV 289

  Fly   104 FSVLE--------------SHFKEAQIFVDADVTY---------------VT--------HDP-- 129
            .|::|              |...:..:..||.:.|               :|        |.|  
Zfish   290 SSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVAVAVQQSPQITVSSLQCNRHKPWR 354

  Fly   130 FSKNF--LLYDVYNKGRQLGGELNITADREIFCNKTN-----------CRVERYLSELYT---RS 178
            |...|  |:.:.:..|  |.|.:|.        |:||           ...|..|.::.|   .|
Zfish   355 FGNRFMTLIKEAHWDG--LTGRINF--------NRTNGLRTDFDLDVISLKEEGLEKIGTWDPAS 409

  Fly   179 ALQHRKSFTGLTMRATAVVTALPLNVS------------------------------IKEIFDFM 213
            .|...::..|.|...|..::...|.||                              ::|:...:
Zfish   410 GLNMTENQKGKTANVTDSLSNRSLVVSTILEEPYVMFKKSDKPLYGNDRFEGYCVDLLRELAAIL 474

  Fly   214 NSKYRIQLDTYARLGYQARQPLRDMLDCKFKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIY 278
            ...|.::|....|.|.|...              ..:|:      ||:.:|:..|||||:||...
Zfish   475 GFGYELRLVEDGRYGAQDES--------------SGQWN------GMVRELMDHKADLAVAPLAI 519

  Fly   279 SFDRALFLQPITKFSVFREICMFRNPRSVSAGLSATEFLQPFSGGVWLTFALLLLLAGCLLWVTF 343
            ::.|...:.....|.......::|.|...:.|:.:  ||.|.|..:|:...|..|...|:|:|..
Zfish   520 TYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFS--FLNPLSPDIWMYILLAYLGVSCVLFVIA 582

  Fly   344 ILERRKQWKP--------------SLLTSCLLSFGAGCIQGAWLTPRSM-----GGRMAFFALMV 389
            .....:.:.|              :||.|.....||...||:.|.|:::     ||...||.|::
Zfish   583 RFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLII 647

  Fly   390 TSYLMYNYYTSIVVSKLLGQPIKSNIRTLQQLADSNLDVGIEPTVYTRIYVETSEEPDVRDLYRK 454
            .|     .||:.:.:.|..:.::|.|.:...||..           |:|.....|:......::|
Zfish   648 IS-----SYTANLAAFLTVERMESPIDSADDLAKQ-----------TKIEYGVVEDGSTMTFFKK 696

  Fly   455 KVLGSKRSPDKIW--IPTEAGVLSVRD-QEGFVYITGVATGYEFVRK----HFLAHQICELNEI- 511
            ..:.:.   ||:|  :.:....:.|:. :||...:  :.:.|.|:.:    .|:..:.|.|.:| 
Zfish   697 TKISTY---DKMWEFMSSRRHSVMVKSIEEGIERV--LTSDYAFLMESTTIEFVTQRNCNLTQIG 756

  Fly   512 PLRDASHTHTVLAKRSPYAELIKLSELRMLETG-VHFKHERSWMETKLHCYQHNHTVAVGLEYAA 575
            .|.|:..........|||.:.|.::.|::.|.| :|...|:.|........::....|:|::...
Zfish   757 GLIDSKAYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEENKEASALGVQNIG 821

  Fly   576 PLFIILLGAIIL 587
            .:||:|...::|
Zfish   822 GIFIVLAAGLVL 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 75/327 (23%)
Lig_chan 343..585 CDD:278489 56/269 (21%)
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 47/263 (18%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 85/412 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591244
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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