DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and Grik2

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_062182.1 Gene:Grik2 / 54257 RGDID:2733 Length:908 Species:Rattus norvegicus


Alignment Length:568 Identity:124/568 - (21%)
Similarity:213/568 - (37%) Gaps:132/568 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 LIYDRSMNFSVLESHFKEAQIFVDADVTYVTHDP--FSKNF--LLYDVYNKGRQLGGELNITADR 156
            |:||.....||....|.:..:   :.:....|.|  |...|  |:.:.:.:|  |.|.:..    
  Rat   322 LMYDAVHVVSVAVQQFPQMTV---SSLQCNRHKPWRFGTRFMSLIKEAHWEG--LTGRITF---- 377

  Fly   157 EIFCNKTN-----------CRVERYLSELYT---RSALQHRKSFTG--------LTMRATAVVTA 199
                ||||           ...|..|.::.|   .|.|...:|..|        |:.|:..|.|.
  Rat   378 ----NKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTI 438

  Fly   200 L------------PLNVS----------IKEIFDFMNSKYRIQLDTYARLGYQARQPLRDMLDCK 242
            |            ||..:          ::|:...:...|.|:|....:.|.|     .|:    
  Rat   439 LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQ-----DDV---- 494

  Fly   243 FKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRALFLQPITKFSVFREICMFRNPRSV 307
                 ..:|:      ||:.:||..|||||:||...::.|...:.....|.......::|.|...
  Rat   495 -----NGQWN------GMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGT 548

  Fly   308 SAGLSATEFLQPFSGGVWLTFALLLLLAGCLLWVTFILERRKQWKP--------------SLLTS 358
            :.|:.:  ||.|.|..:|:...|..|...|:|:|.......:.:.|              :||.|
  Rat   549 NPGVFS--FLNPLSPDIWMYVLLACLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNS 611

  Fly   359 CLLSFGAGCIQGAWLTPRSM-----GGRMAFFALMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTL 418
            .....||...||:.|.|:::     ||...||.|::.|     .||:.:.:.|..:.::|.|.:.
  Rat   612 FWFGVGALMRQGSELMPKALSTRIVGGIWWFFTLIIIS-----SYTANLAAFLTVERMESPIDSA 671

  Fly   419 QQLADSNLDVGIEPTVYTRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWI---PTEAGVLSVRDQ 480
            ..||..           |:|.....|:......::|..:.:.   ||:|.   .....||...::
  Rat   672 DDLAKQ-----------TKIEYGAVEDGATMTFFKKSKISTY---DKMWAFMSSRRQSVLVKSNE 722

  Fly   481 EGFVYITGVATGYEFVRK----HFLAHQICELNEI-PLRDASHTHTVLAKRSPYAELIKLSELRM 540
            ||...:  :.:.|.|:.:    .|:..:.|.|.:| .|.|:..........|||.:.|.::.|::
  Rat   723 EGIQRV--LTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQL 785

  Fly   541 LETG-VHFKHERSWMETKLHCYQHNHTVAVGLEYAAPLFIILLGAIIL 587
            .|.| :|...|:.|........:.....|:|::....:||:|...::|
  Rat   786 QEEGKLHMMKEKWWRGNGCPEEESKEASALGVQNIGGIFIVLAAGLVL 833

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 77/327 (24%)
Lig_chan 343..585 CDD:278489 57/269 (21%)
Grik2NP_062182.1 Periplasmic_Binding_Protein_Type_1 34..414 CDD:299141 23/104 (22%)
ANF_receptor 52..395 CDD:279440 18/85 (21%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:304360 91/412 (22%)
Glutamate binding. /evidence=ECO:0000269|PubMed:15721240, ECO:0000269|PubMed:17115050, ECO:0007744|PDB:1S50, ECO:0007744|PDB:1S7Y, ECO:0007744|PDB:2I0B, ECO:0007744|PDB:2I0C 516..518 1/1 (100%)
Lig_chan 562..831 CDD:278489 63/289 (22%)