DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and Gria1

DIOPT Version :10

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:442 Identity:95/442 - (21%)
Similarity:171/442 - (38%) Gaps:113/442 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 EIFDFMNSKYRIQLDTYARLGYQARQPLRDMLDCKFKYIFRDRWSDGNATGGMIGDLILDKADLA 272
            ||...:...||:::.:..:  |.||.|                  |..|..||:|:|:..:||:|
  Rat   445 EIAKHVGYSYRLEIVSDGK--YGARDP------------------DTKAWNGMVGELVYGRADVA 489

  Fly   273 IAPFIYSFDRAL---FLQPITKFSVFREICMFRNPRSVSAGLSATEFLQPFSGGVWLTFALLLLL 334
            :||...:..|..   |.:|.....:   ..|.:.|:....|:.:  ||.|.:..:|:        
  Rat   490 VAPLTITLVREEVIDFSKPFMSLGI---SIMIKKPQKSKPGVFS--FLDPLAYEIWM-------- 541

  Fly   335 AGCLLW-------VTFILERRK--QWKP------------------SLLTSCLLSFGAGCIQGAW 372
              |:::       |.|::.|..  :|..                  .:..|...|.||...||..
  Rat   542 --CIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCD 604

  Fly   373 LTPRSMGGRMA-----FFALMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTLQQLADSNLDVGIEP 432
            ::|||:.||:.     ||.|::.|     .||:.:.:.|..:.:.|.|.:.:.||..        
  Rat   605 ISPRSLSGRIVGGVWWFFTLIIIS-----SYTANLAAFLTVERMVSPIESAEDLAKQ-------- 656

  Fly   433 TVYTRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWI------------PTEAGVLSVRDQEG-FV 484
               |.|...|.|....::.:|:..:...   :|:|.            .||.|::.||..:| :.
  Rat   657 ---TEIAYGTLEAGSTKEFFRRSKIAVF---EKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYA 715

  Fly   485 YITGVATGYEFVRKHFLAHQICELNEIPLR-DASHTHTVLAKRSPYAELIKLSELRMLETGVHFK 548
            |:. .:|..|::.:    .:.|:..::... |:........|.|.....:.|:.|::.|.|:..|
  Rat   716 YLL-ESTMNEYIEQ----RKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDK 775

  Fly   549 HERSWMETKLHC-----YQHNHTVAVGLEYAAPLFIILLGAIILCMGILGLE 595
            .:..|...|..|     ...:.|.|:.|...|.:|.||:|.:.|.|.:..:|
  Rat   776 LKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIE 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Lig_chan-Glu_bd <235..283 CDD:463166 11/47 (23%)
Periplasmic_Binding_Protein_Type_2 <259..>325 CDD:473866 18/68 (26%)
Lig_chan 343..584 CDD:459656 60/284 (21%)
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 83/400 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Blue background indicates that the domain is not in the aligned region.

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