DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and gria4a

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:527 Identity:116/527 - (22%)
Similarity:193/527 - (36%) Gaps:133/527 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 YDVYNKGRQLGGELNITADREIFCNKTN--------------CRVERYLSELYTRSALQHRKSFT 187
            :|.|      |..:|.|.|  :|..|:|              ..|:..|| :...||:::|    
Zfish   358 FDHY------GRRVNYTMD--VFELKSNGPRKIGYWNDLDKLVLVQNELS-MGNDSAMENR---- 409

  Fly   188 GLTMRATAVVTAL---PLNVSIK---------------------EIFDFMNSKYRIQLDTYARLG 228
                  |.:||.:   |. |.:|                     |:...:..||:|.:....:  
Zfish   410 ------TVIVTTIMEGPY-VMLKKNWEMYEGNEQFEGYCVDLASEVAKHIGIKYKISIVLDGK-- 465

  Fly   229 YQARQPLRDMLDCKFKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRAL---FLQPIT 290
            |.||.|     :.|.       |:      ||:|:|:..||::|:||...:..|..   |.:|..
Zfish   466 YGARDP-----ETKI-------WN------GMVGELVYGKAEIAVAPLAITLVREEVIDFSKPFM 512

  Fly   291 KFSVFREICMFRNPRSVSAGLSATEFLQPFSGGVWLTFALLLLLAGCLL----------WVTFIL 345
            ...:   ..|.:.|:....|:.:  ||.|.:..:|:......:....:|          |.|...
Zfish   513 SLGI---SIMIKKPQKSKPGVFS--FLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEP 572

  Fly   346 ERRKQWKPS--------LLTSCLLSFGAGCIQGAWLTPRSMGGRMA-----FFALMVTSYLMYNY 397
            |......||        :..|...|.||...||...||||:.||:.     ||.|::.|....|.
Zfish   573 EEGSDGPPSDQPPNEFGIFNSLWFSLGAFMQQGCDFTPRSLSGRIVGGVWWFFTLIIISSYTANL 637

  Fly   398 YTSIVVSKLLGQPIKS--NIRTLQQLADSNLDVGIEPTVYTRIYVETSEEPDVRDLYRKKVLGSK 460
            ...:.|.::: .||:|  ::....::|...||.|.....:.|..:.         :|.|.....|
Zfish   638 AAFLTVERMV-SPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIA---------VYEKMWSYMK 692

  Fly   461 RSPDKIWIPTEA-GVLSVRDQEGFVYITGVATGYEFVRKHFLAHQICELNEIPLR-DASHTHTVL 523
            .:...::..|.| ||..||..:|.......:|..|:..:    .:.|:..::... |:.......
Zfish   693 SAEPTVFTKTTAEGVARVRKSKGKYAFLLESTMNEYTEQ----RKPCDTMKVGGNLDSKGYGVAT 753

  Fly   524 AKRSPYAELIKLSELRMLETGVHFKHERSWMETKLHC------YQHNHTVAVGLEYAAPLFIILL 582
            .|.|.....:.|:.|::.|.||..|.:..|...|..|      .:...:.|:.|...|.:|.||:
Zfish   754 PKGSQLGTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGPKDSGSKDKSSQALSLSNVAGVFYILV 818

  Fly   583 GAIILCM 589
            |.:.|.|
Zfish   819 GGLGLAM 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 73/329 (22%)
Lig_chan 343..585 CDD:278489 61/264 (23%)
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..393 CDD:107383 9/42 (21%)
ANF_receptor 34..375 CDD:279440 7/24 (29%)
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 92/431 (21%)
Lig_chan 540..821 CDD:278489 65/294 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591223
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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