DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and gria3b

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:814 Identity:149/814 - (18%)
Similarity:265/814 - (32%) Gaps:312/814 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 KLSHVLILHCSLSHLALLAQSKNIFTQFQPLHSDIQLNDDFLNHNILKLGVFLDINCDKSGTVLD 81
            |..:.|...|...|.:.:..|       .|:.||:|.              .:.:.....|.||.
Zfish    98 KSMNTLTSFCGALHTSFVTPS-------YPIDSDVQF--------------VIQMRPPLKGAVLS 141

  Fly    82 MASAKRFFSHRYHW----LIYDRSMNFSVLES------------------------HFK------ 112
            :.|       .|.|    .:||....||:|::                        .|:      
Zfish   142 LLS-------HYKWDKFVYLYDTDRGFSILQAIMEAAVANNWQVTARSVGSITDPQEFRRIIEEM 199

  Fly   113 ----EAQIFVDADVTYVTHDPFSKNFLLYDVYNKGRQLGGE---------LNITADREIF----- 159
                |.:..:|.:|..:       |.:|..|...|:...|.         .||:.|: :|     
Zfish   200 DRRQEKRYLIDCEVDRI-------NVILEQVVTLGKNSRGYHYIIANLGFTNISLDK-VFLGGAN 256

  Fly   160 ------CNKTNCRVERYLSE-----------------LYTRSALQH-------------RKSFTG 188
                  .|..|..|:::|..                 .|| |||.:             |:....
Zfish   257 ISGFQIINPENLVVQQFLQRWDRLDEREFPEAKNTPLKYT-SALSYDAILVIAEAFRYLRRQRVD 320

  Fly   189 LTMRATA----VVTALP------LNVSIKEI----------FDFMNSKYRIQLDTY-------AR 226
            ::.|.:|    ...|:|      :..::|.:          ||....:....:|.|       .:
Zfish   321 VSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDSFGRRTNYTIDVYEMKTGGPRK 385

  Fly   227 LGY-QARQPLRDMLDCKF----------------------------------------------- 243
            :|| ...:...:::|.:|                                               
Zfish   386 IGYWNEFERFVNIMDQQFTNDSSSVENRTIVVTTIMEAPYVMYKKNHMHLEGNEKYEGYCVDLAS 450

  Fly   244 ------------------KYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRAL---FLQ 287
                              ||..||  .:..:..||:|:|:..:||:|:||...:..|..   |.:
Zfish   451 EIAKHVGIKYRLSIVMDGKYGARD--PETKSWNGMVGELVYGRADIAVAPLTITLVREEVIDFSK 513

  Fly   288 PITKFSVFREICMFRNPRSVSAGLSATEFLQPFSGGVWLTFALLLLLAGCLLW-------VTFIL 345
            |.....:   ..|.:.|:....|:.:  ||.|.:..:|:          |:::       |.|::
Zfish   514 PFMSLGI---SIMIKKPQKSKPGVFS--FLDPLAYEIWM----------CIVFAYIGVSVVLFLV 563

  Fly   346 ERRK--QWK----------------PS---LLTSCLLSFGAGCIQGAWLTPRSMGGRMA-----F 384
            .|..  :|:                |:   :..|...|.||...||..::|||:.||:.     |
Zfish   564 SRFSPYEWQLDETDEVKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 628

  Fly   385 FALMVTSYLMYNYYTSIVVSKLLGQPIKS--NIRTLQQLADSNLDVGIEPTVYTR----IYVE-- 441
            |.|::.|....|....:.|.::: .||:|  ::....::|...||.|.....:.|    :|.:  
Zfish   629 FTLIIISSYTANLAAFLTVERMV-SPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMW 692

  Fly   442 ---TSEEPDVRDLYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEG-FVYITGVATGYEFVRKHFLA 502
               .|.||.|         .:|.:||        ||..||..:| |.::. .:|..|::.:    
Zfish   693 SYMKSAEPSV---------FAKTTPD--------GVARVRKSKGKFAFLL-ESTMNEYIEQ---- 735

  Fly   503 HQICELNEIPLR-DASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERSWMETKLHC-----Y 561
            .:.|:..::... |:........|.|.....:.|:.|::.|.|:..|.:..|...|..|     .
Zfish   736 RKPCDTMKVGGNLDSKGYGVATPKGSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGD 800

  Fly   562 QHNHTVAVGLEYAAPLFIILLGAIILCMGILGLE 595
            ..:.|.|:.|...|.:|.||:|.:.|.|.:..:|
Zfish   801 SKDKTSALSLSNVAGVFYILVGGLGLAMMVALIE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 75/348 (22%)
Lig_chan 343..585 CDD:278489 65/285 (23%)
gria3bNP_938174.1 Periplasmic_Binding_Protein_Type_1 25..396 CDD:299141 54/334 (16%)
ANF_receptor 36..379 CDD:279440 52/317 (16%)
PBP2_iGluR_AMPA 412..794 CDD:270433 81/421 (19%)
Lig_chan 544..824 CDD:278489 68/312 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591264
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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