DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and GluRIIB

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_523485.3 Gene:GluRIIB / 33789 FlyBaseID:FBgn0020429 Length:913 Species:Drosophila melanogaster


Alignment Length:642 Identity:133/642 - (20%)
Similarity:236/642 - (36%) Gaps:162/642 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PLHSDIQLNDDFLNHNILKLG-------------VFLDINCDKSGTVLDMASAKRFFSHRYHWLI 97
            |:|.:|.:.|:.::.....||             ..|:|: .:.|..:...|..|.|......|:
  Fly   276 PVHDEIDVFDNSVDTRFSSLGSQLVYDSIVLFYNALLEIS-QRPGFYIPNFSCGRGFWQPGPRLV 339

  Fly    98 YD-RSMNFSVLESHFKEAQIFVDAD--------------VTYVTHDPFSKNFLLYDVYNKGRQLG 147
            .. :.:...:::..||..::.::||              :..||| .::|.|.|.| :.|.|:  
  Fly   340 EQMKQITPKMVKPPFKTQRLQINADGQREDFNLEVYNPIIDRVTH-IWNKEFQLVD-FEKLRE-- 400

  Fly   148 GELNITADREIFCNKTNCRVERYLSELYTRSALQHRKSFTGLTMRATAVVTALPLNVSIKEIFDF 212
                         |.|         :...:..||:::.|:...:|.| |.|.:.     |..|.:
  Fly   401 -------------NST---------QALKQKRLQNKEDFSQKPIRYT-VATRVG-----KPYFSW 437

  Fly   213 MNSKYRIQLDTYARL-GYQARQPLRDML-----DCKFKYIFR--------------DRWS----- 252
            ......:..:...|. ||..     |::     :|||.:.|.              |.|.     
  Fly   438 REEPEGVHYEGNERFEGYAV-----DLIYMLAQECKFDFNFEPVRDNKYGSYDANTDEWDGIIRQ 497

  Fly   253 --DGNATGGMIGDLILDKADLAIAPFIYSFDR-----ALFLQPITKFSVFREICMFRNPRSVSAG 310
              |.||..| |.||.:.:|..::..|...|.:     ..:.:|..|..::               
  Fly   498 LIDNNAQIG-ICDLTITQARRSVVDFTVPFMQLGISILSYKEPPPKADIY--------------- 546

  Fly   311 LSATEFLQPFSGGVWLTFALLLLLAGCLL----------W------VTFILERRKQWKPSLLTSC 359
                .||.|::..|||...:.:::....|          |      |...:||:..|  .|..:.
  Fly   547 ----AFLNPYNAEVWLFVMIAMMITAFALIFTGRIDQYEWDQPVENVNREMERQNIW--HLSNAL 605

  Fly   360 LLSFGAGCIQGAWLTPRSMGGRM--AF---FALMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTLQ 419
            .|..|:...||..|.||.:..|:  ||   |||:::...:......|..||:.|     :|.:|.
  Fly   606 WLVLGSMLNQGCDLLPRGLPMRLLTAFWWIFALLISQTYIAKLAAFITSSKIAG-----DIGSLH 665

  Fly   420 QLADSN-LDVGIEPTVYTRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEG- 482
            .|.|.| :..|......|.:|...|.:.|.|..: .|:|..|  ||......|.||..|:..:| 
  Fly   666 DLVDQNKVQFGTIRGGATSVYFSESNDTDNRMAW-NKMLSFK--PDAFTKNNEEGVDRVKLSKGT 727

  Fly   483 FVYITGVATGYEFVRKHFLAHQICELNEI-PLRDASHTHTVLAKRSPYAELIKLSELRMLETGVH 546
            :.::........:|:::      |||.:| ......|....:...:.:...:.:..||:.|.|..
  Fly   728 YAFLMETTNLQYYVQRN------CELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGEL 786

  Fly   547 FKHERSWMET-KLHCYQHNHTVAVG---LEYAAPLFIILLGAIILCMGILGLEVIWH 599
            ||....|..: :..|..:..|:..|   ::....||::|:..:::.:.|...|.:||
  Fly   787 FKLRNKWFNSNESTCDSNVPTIDDGQFDMDSVGGLFVVLIVGVVVGLVIGVAEFLWH 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 75/328 (23%)
Lig_chan 343..585 CDD:278489 61/253 (24%)
GluRIIBNP_523485.3 PBP1_iGluR_Kainate 26..393 CDD:107377 22/118 (19%)
ANF_receptor 41..378 CDD:279440 17/102 (17%)
PBP2_iGluR_Kainate 422..795 CDD:270432 92/419 (22%)
Lig_chan 555..822 CDD:278489 64/282 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462584
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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