DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and GluRIIA

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:636 Identity:130/636 - (20%)
Similarity:237/636 - (37%) Gaps:173/636 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LALLAQS-KNIFTQFQPLHSDIQLNDDFLNHNILKLGVFLDINCDKSGTVLDMASAKRFFSHRYH 94
            :.|.|.| :|:....||.|..   |....:.:...||.|:         |.:|            
  Fly   314 VVLFASSARNVIAAMQPFHPP---NRHCGSSSPWMLGAFI---------VNEM------------ 354

  Fly    95 WLIYDRSMNFSVLESHFKEAQIFVDADVTYVTHDPFSKNFLLYDVYNKGRQLGGELNI------- 152
                 ::::...:|.|||                  ::|..| |.|  |:::...|.|       
  Fly   355 -----KTISEDDVEPHFK------------------TENMKL-DEY--GQRIHFNLEIYKPTVNE 393

  Fly   153 -----TADREIFCNKTNCRVERYLSELYTRSALQHRKSFTGLTMRATAVVTAL--PLNVSIKEIF 210
                 |.|..|.....|..:|   |...|:...:.||.:|        |||..  |. ..:||  
  Fly   394 PMMVWTPDNGIKKRLLNLELE---SAGTTQDFSEQRKVYT--------VVTHYEEPY-FMMKE-- 444

  Fly   211 DFMNSKYRIQLDTYARLGYQARQPLRDMLDCKFKYIFRDRWSDGNAT--------GGMIGDLILD 267
            |..|.:.|.:.:.||   ......|.::::..::::.    .:||..        .|:|..||..
  Fly   445 DHENFRGREKYEGYA---VDLISKLSELMEFDYEFMI----VNGNGKYNPETKQWDGIIRKLIDH 502

  Fly   268 KADLAIAPF-IYSFDRAL--FLQPITKFSVFREICMFRNPRSVSAGLSATEFLQPFSGGVWLTFA 329
            .|.:.:... |....|::  |..|..:..:  .|..:::|....   :...||:||:..||    
  Fly   503 HAQIGVCDLTITQMRRSVVDFTVPFMQLGI--SILHYKSPPEPK---NQFAFLEPFAVEVW---- 558

  Fly   330 LLLLLAGCLLWVTFILERR---KQWKP---------------SLLTSCLLSFGAGCIQGAWLTPR 376
            :.::.|..::.:.|:...|   ::|.|               ::..|..|..|:...||..:.||
  Fly   559 IYMIFAQLIMTLAFVFIARLSYREWLPPNPAIQDPDELENIWNVNNSTWLMVGSIMQQGCDILPR 623

  Fly   377 S-----MGGRMAFFALMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTLQQLADSN-LDVGIEPTVY 435
            .     :.|...|||||     |.:.||:.:.:.|.....:|:|::||.|.:.: :..|......
  Fly   624 GPHMRILTGMWWFFALM-----MLSTYTANLAAFLTSNKWQSSIKSLQDLIEQDKVHFGSMRGGS 683

  Fly   436 TRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEGFVYITGVATGYEFVRK-H 499
            |.::...|.:.|.:..:.:.   ...:|.......:.||..||.::|         ||.|:.: .
  Fly   684 TSLFFSESNDTDYQRAWNQM---KDFNPSAFTSTNKEGVARVRKEKG---------GYAFLMETT 736

  Fly   500 FLAHQI---CELNEIPLR-DASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERSWMETKLHC 560
            .|.:.|   |:|.:|..: ...|....:...|.|...:.:|.|::.|.|...|.:..|.:     
  Fly   737 SLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRTNLSVSILQLSERGELQKMKNKWWK----- 796

  Fly   561 YQHNHTVA-----------VGLEYAAPLFIILLGAIILCMGILGL-EVIWH 599
               ||.|.           :.:.....:|::|.|.:::.: |||: |.:|:
  Fly   797 ---NHNVTCDSYHEVDGDELSIIELGGVFLVLAGGVLIGV-ILGIFEFLWN 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 72/339 (21%)
Lig_chan 343..585 CDD:278489 59/281 (21%)
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 26/139 (19%)
ANF_receptor 46..386 CDD:279440 23/121 (19%)
PBP2_iGluR_Kainate 426..796 CDD:270432 88/413 (21%)
Lig_chan 556..828 CDD:278489 61/300 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462587
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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