DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and Grik4

DIOPT Version :10

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:692 Identity:152/692 - (21%)
Similarity:257/692 - (37%) Gaps:176/692 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LIHM-AKLSHVLILHCSLSHLALL-AQSKNIFTQFQPLHSDIQLNDDFLNH--NILKLGVFLDIN 72
            :||. |.:||.::|  ..:.|.:: |....|||.   |...:|..|..::.  |||...:|    
  Rat   216 IIHANASMSHTILL--KAAELGMVSAYYTYIFTN---LEFSLQRMDSLVDDRVNILGFSIF---- 271

  Fly    73 CDKSGTVLDMASAKRFFSHRYHWLIYDRSMNFSVLESHFKEAQIFVDADVTYVTHDPFS----KN 133
                      ..:..||..      :.:|:|.|..|:               ..|.||:    .:
  Rat   272 ----------NQSHAFFQE------FSQSLNQSWQEN---------------CDHVPFTGPALSS 305

  Fly   134 FLLYD-VY---------NKGRQLGGELNITADREIFCNKTNCRVERYLSEL-------------- 174
            .||:| ||         |:.:::|.:.......:|:.:.|:......:.||              
  Rat   306 ALLFDAVYAVVTAVQELNRSQEIGVKPLSCGSAQIWQHGTSLMNYLRMVELEGLTGHIEFNSKGQ 370

  Fly   175 ---YTRSALQH-RKSF---------TGLTM--------------RATAVVTALPLN--VSIKEIF 210
               |....||. |..|         .||:|              ..|.|||.:..|  :.:|...
  Rat   371 RSNYALKILQFTRNGFRQIGQWHVAEGLSMDSRLYASNISDSLFNTTLVVTTILENPYLMLKGNH 435

  Fly   211 DFMNSKYRIQLDTYARLGYQARQPLRDMLDCKFKYIFRDRWSDG-----NATG---GMIGDLILD 267
            ..|...     |.|........:.|.::|  :|.|..| ...||     .|.|   ||:|:||..
  Rat   436 QDMEGN-----DRYEGFCVDMLKELAEIL--RFNYKIR-LVGDGVYGVPEANGTWTGMVGELIAR 492

  Fly   268 KADLAIAPFIYSFDRAL---FLQPITK--FSVFREICMFRNPRSVSAGLSATEFLQPFSGGVWLT 327
            |||||:|....:.:|..   |.:|...  .|:...:.|.|.|...|       ||.|||.||||.
  Rat   493 KADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRRPGYFS-------FLDPFSPGVWLF 550

  Fly   328 FALLLLLAGCLLWVTFILERRKQWKP---------------SLLTSCLLSFGAGCIQGAWLTPRS 377
            ..|..|...|:|::...|...:.:.|               ||..|.....|....||:.:.||:
  Rat   551 MLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRA 615

  Fly   378 MGGR------MAFFALMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTLQQLADSN-LDVGIEPTVY 435
            :..|      .||..::::|      ||:.:.:.|..|.::..|.::..|||.. ::.|   |::
  Rat   616 LSTRCVSGVWWAFTLIIISS------YTANLAAFLTVQRMEVPIESVDDLADQTAIEYG---TIH 671

  Fly   436 ---TRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEGFVYITGVATGYEFVR 497
               :..:.:.|.....:.::  ..:.||: |......||.|:..|.: ..:.::      .|...
  Rat   672 GGSSMTFFQNSRYQTYQRMW--NYMYSKQ-PSVFVKSTEEGIARVLN-SNYAFL------LESTM 726

  Fly   498 KHFLAHQICELNEI-PLRDASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERSWMETKLHCY 561
            ..:...:.|.|.:| .|.|.......:...|.:.:...|:.|::.|.......:|.|.|......
  Rat   727 NEYYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEILKRKWWEGGKCPK 791

  Fly   562 QHNHTV-AVGLEYAAPLFIILLGAIILCMGILGLEVIWH-RH 601
            :.:|.. .:|:|....:|::|:..:|:.:.:..||.:|. ||
  Rat   792 EEDHRAKGLGMENIGGIFVVLICGLIVAIFMAMLEFLWTLRH 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Lig_chan-Glu_bd <235..283 CDD:463166 20/55 (36%)
Periplasmic_Binding_Protein_Type_2 <259..>325 CDD:473866 25/70 (36%)
Lig_chan 343..584 CDD:459656 50/267 (19%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 46/225 (20%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 94/403 (23%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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