DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and glr-6

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_741822.2 Gene:glr-6 / 180955 WormBaseID:WBGene00001617 Length:844 Species:Caenorhabditis elegans


Alignment Length:423 Identity:95/423 - (22%)
Similarity:154/423 - (36%) Gaps:109/423 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 DMLD-----CKFKYIFR--------------DRWSDGNATGGMIGDLILDKADLAIAPFIYSFDR 282
            |:||     ..|.|..:              |.|.      ||||:::...||:|:||...:..|
 Worm   440 DLLDKLAEMLHFNYTLKIVKDNKYGERKNGTDEWD------GMIGEILRGDADMAVAPITVTATR 498

  Fly   283 AL---FLQPITKFSV---FREICMFRNPRSVSAGLSATEFLQPFSGGVWLTFALLLLLAGCLLWV 341
            ..   |..|..:..:   .|:    .||:|.|   |.|.||.|.|..||...|:..::...|:.|
 Worm   499 LEVIDFTDPFLQLGISMLMRQ----PNPKSSS---SLTRFLWPLSASVWTFSAIATVITALLVTV 556

  Fly   342 TFILERRKQ----------WKPSLLTSCLLSFGAG--CIQGAWLTPRSMGGRMAFFALMVTSYLM 394
            ..:|..::.          |   .|...||..|:|  |..||   .|.:......|.|::.:...
 Worm   557 AAVLSPKESTAEFKIQNSVW---YLVCILLRAGSGYNCQAGA---TRLISAVWWSFTLVLIAQYT 615

  Fly   395 YNYYTSIVVSKL---------LGQPIKSNIRTLQQLADSNLDVGIEPTVYTRIYVETSEEPDVRD 450
            .|:...:.|.:.         ||...:.|..::  |..|.:..    ..|:||  ||     .|.
 Worm   616 ANFAALLTVDRKSMPFNSFEELGNQTEYNFGSI--LGGSTMQF----FKYSRI--ET-----FRR 667

  Fly   451 LYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEGFVYITGVATGYEFVRKHFLAHQI---CELNEI- 511
            |:.:.   ....|.........||..|.: |.:|::...||         |.:|:   |.|..: 
 Worm   668 LWERM---QSAEPSAFVGTNHEGVNRVLN-EKYVFLMESAT---------LDYQVTQNCNLTRVG 719

  Fly   512 -PLRDASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERS-WMETKLHCYQ---HNHTVAVGL 571
             .:..::.....|.|.|.:.|.:....|.:.|.|:....:.: |.:::..|..   .:...|:|.
 Worm   720 NVVLGSNGYSIALPKGSKWREKLTRQILDLNEKGIILMLKNNWWKKSQQECQSSEPEDLQTALGA 784

  Fly   572 EYAAPLFIILL---GAIILCMGILGLEVIWHRH 601
            |....||::|.   |..:||      .|:.|.|
 Worm   785 ENVYGLFLLLALGSGIGVLC------AVLEHTH 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 74/332 (22%)
Lig_chan 343..585 CDD:278489 55/274 (20%)
glr-6NP_741822.2 PBP1_iGluR_non_NMDA-like 21..394 CDD:380591
PBP2_iGluR_Kainate 409..764 CDD:270432 81/368 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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