DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and Grin3b

DIOPT Version :10

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:424 Identity:84/424 - (19%)
Similarity:153/424 - (36%) Gaps:155/424 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 DCKFKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRAL---FLQPITKFSVFREICMF 301
            |.|:..:...||:      |::|||:..:|.:|:..|..:..|:.   |..|.  ||....| |.
Mouse   582 DGKYGALRDGRWT------GLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPF--FSTSLGI-MV 637

  Fly   302 RNPRSVSAGLSATEFLQPFSGGVWL-TFALLLLLAGCLLWVTFILERRKQWK-PSLLT------- 357
            |. |..::.:.|  |:.|....:|: .||.|.|.|   |::|..     :|: |..||       
Mouse   638 RT-RDTASPIGA--FMWPLHWSMWVGVFAALHLTA---LFLTLY-----EWRSPYGLTPRGRNRG 691

  Fly   358 -----SCLLSFGAGCIQGAWL---TPRSMGGRM-----AFFALMVTSYLMYNYYTSIVVSKLLGQ 409
                 |..|:.....:.|..:   ||:...||.     |.|.|:|.|     .||:.:.:.::|.
Mouse   692 TVFSYSSALNLCYAILFGRTVSSKTPKCPTGRFLMNLWAIFCLLVLS-----SYTANLAAVMVGD 751

  Fly   410 PIKSNIRTLQQLA--------------------DSNLDVGIE---------------PTVYTRIY 439
                  :|.::|:                    :|:.:..|:               ||....:.
Mouse   752 ------KTFEELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPHGVA 810

  Fly   440 VETSEEPDVRDLYRKKVLGSKRSPDKIWIPTEAGVLSVRDQEGFVY-ITGVATGY---------- 493
            :.||:.|.:......|.|    ...::.|..:..:|:|    |..: |.|...|.          
Mouse   811 MLTSDPPKLNAFIMDKSL----LDYEVSIDADCKLLTV----GKPFAIEGYGIGLPQNSPLTSNL 867

  Fly   494 -EFVRKHFLAHQICELNEIPLRDASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERSWMETK 557
             ||:.::                         |.|.:.:|:.....:|:..|     :|.:..|:
Mouse   868 SEFISRY-------------------------KSSGFIDLLHDKWYKMVPCG-----KRVFAVTE 902

  Fly   558 LHCYQHNHTVAVGLEYAAPLFIILLGAIILCMGI 591
                    |:.:|:.:.:.||      ::||:|:
Mouse   903 --------TLQMGVYHLSGLF------VLLCLGL 922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Lig_chan-Glu_bd <235..283 CDD:463166 11/42 (26%)
Periplasmic_Binding_Protein_Type_2 <259..>325 CDD:473866 19/68 (28%)
Lig_chan 343..584 CDD:459656 50/308 (16%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 73/369 (20%)
Lig_chan 654..921 CDD:459656 60/337 (18%)
Blue background indicates that the domain is not in the aligned region.

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