DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir75b and Grin2c

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:448 Identity:96/448 - (21%)
Similarity:169/448 - (37%) Gaps:110/448 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 IKEIFDFMNSKYRIQLDTYARLGYQARQPLRDMLDCKFKYIFRDRWSDGNATGGMIGDLILDKAD 270
            :|::...:...|.:.|.|..:.|.:.                |..|:      ||||::...:||
Mouse   524 LKKLAKVVKFSYDLYLVTNGKHGKRV----------------RGVWN------GMIGEVYYKRAD 566

  Fly   271 LAIAPFIYSFDRALFLQPITKFSV-FRE----ICMFRNPRSVSAGLSATEFLQPFSGGVWLTFAL 330
            :||.....:.:|:    .|..||| |.|    :.:.|:..:|    |.:.||:|:|..||     
Mouse   567 MAIGSLTINEERS----EIIDFSVPFVETGISVMVARSNGTV----SPSAFLEPYSPAVW----- 618

  Fly   331 LLLLAGCLLWVTFILERRKQWKPSLLTSCLL--------SFGAGCIQGAWL-------------T 374
            :::...||..|...:...:.:.|......|.        ||..|  :..||             .
Mouse   619 VMMFVMCLTVVAITVFMFEYFSPVSYNQNLTKGKKSGGPSFTIG--KSVWLLWALVFNNSVPIEN 681

  Fly   375 PRSMGGRM-----AFFALMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTLQQLADSNLD------- 427
            ||....::     ||||::..:     .||:.:.:.::.:   ..|.|:..|:|....       
Mouse   682 PRGTTSKIMVLVWAFFAVIFLA-----SYTANLAAFMIQE---QYIDTVSGLSDKKFQRPQDQYP 738

  Fly   428 ---VGIEPTVYTRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWIPTEAGVLSV-RDQEGFVYITG 488
               .|..|...|    |.:...:.||::...|..::||.:......:.|...| |..:.|:|...
Mouse   739 PFRFGTVPNGST----ERNIRSNYRDMHTHMVKFNQRSVEDALTSLKMGARHVSRKLDAFIYDAA 799

  Fly   489 VATGYEFVRKHFLA--HQICELNEIPLRDASHT---HTVLAKRSPYAELIKLSELRMLETGVHFK 548
            |.        :::|  .:.|:|..|.......|   ...:.|.|.:...|.|:.|:.|..|...|
Mouse   800 VL--------NYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQK 856

  Fly   549 HERSWMETKLHCYQHNHTVA--VGLEYAAPLFIILLGAIILCMGILGLE--VIWH-RH 601
            .|..|:....| .:.|..::  :.::..|.:|.:||.|:.|.:.:...|  |.|. ||
Mouse   857 LETVWLSGICH-NEKNEVMSSKLDIDNMAGVFYMLLVAMGLALLVFAWEHLVYWKLRH 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 75/346 (22%)
Lig_chan 343..585 CDD:278489 55/285 (19%)
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 84/401 (21%)
NMDAR2_C 905..>980 CDD:371139 4/9 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846361
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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