DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and Gria2

DIOPT Version :10

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:512 Identity:120/512 - (23%)
Similarity:196/512 - (38%) Gaps:102/512 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 QLGGELNITADREIFCNKTN-CRVERYLSE----LYTRSALQHRKSFTGLTMRATAVVTAL--PL 202
            |.|..:|.|.:  |...||| .|...|.||    :.|.:.|......:||..:...|.|.|  |.
Mouse   364 QNGKRINYTIN--IMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPY 426

  Fly   203 NVSIKEIFDFMNSKYRIQLDTYARLGYQARQPLRDMLDCKFKY---IFRD-----RWSDGNATGG 259
             |.:|:..:.:....|.:       ||...........|.|||   |..|     |.:|.....|
Mouse   427 -VMMKKNHEMLEGNERYE-------GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNG 483

  Fly   260 MIGDLILDKADLAIAPFIYSFDRAL---FLQPITKFSVFREICMFRNPRSVSAGLSATEFLQPFS 321
            |:|:|:..|||:||||...:..|..   |.:|.....:   ..|.:.|:....|:.:  ||.|.:
Mouse   484 MVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGI---SIMIKKPQKSKPGVFS--FLDPLA 543

  Fly   322 GGVWLTFALLLLLAGCLL----------WVTFILERRKQWKPS-------LLTSCLLSFGAGCIQ 369
            ..:|:......:....:|          |.|...|..::.:.|       :..|...|.||...|
Mouse   544 YEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQ 608

  Fly   370 GAWLTPRSMGGRMA-----FFALMVTSYLMYNYYTSIVVSKLLGQPIKS--NIRTLQQLADSNLD 427
            |..::|||:.||:.     ||.|::.|....|....:.|.::: .||:|  ::....::|...||
Mouse   609 GCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV-SPIESAEDLSKQTEIAYGTLD 672

  Fly   428 VGIEPTVYTRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWI------------PTEAGVLSVRDQ 480
            .|                 ..::.:|:..:...   ||:|.            .|..||..||..
Mouse   673 SG-----------------STKEFFRRSKIAVF---DKMWTYMRSAEPSVFVRTTAEGVARVRKS 717

  Fly   481 EG-FVYITGVATGYEFVRKHFLAHQICELNEIPLR-DASHTHTVLAKRSPYAELIKLSELRMLET 543
            :| :.|:. .:|..|::.:    .:.|:..::... |:........|.|.....:.|:.|::.|.
Mouse   718 KGKYAYLL-ESTMNEYIEQ----RKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQ 777

  Fly   544 GVHFKHERSWMETKLHC-----YQHNHTVAVGLEYAAPLFIILLGAIILCMGILGLE 595
            ||..|.:..|...|..|     .....|.|:.|...|.:|.||:|.:.|.|.:..:|
Mouse   778 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Lig_chan-Glu_bd <235..283 CDD:463166 19/55 (35%)
Periplasmic_Binding_Protein_Type_2 <259..>325 CDD:473866 20/68 (29%)
Lig_chan 343..584 CDD:459656 59/273 (22%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 12/35 (34%)
PBP2_iGluR_AMPA 413..794 CDD:270433 92/419 (22%)

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