DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and Gria2

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001344853.2 Gene:Gria2 / 14800 MGIID:95809 Length:901 Species:Mus musculus


Alignment Length:512 Identity:120/512 - (23%)
Similarity:196/512 - (38%) Gaps:102/512 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 QLGGELNITADREIFCNKTN-CRVERYLSE----LYTRSALQHRKSFTGLTMRATAVVTAL--PL 202
            |.|..:|.|.:  |...||| .|...|.||    :.|.:.|......:||..:...|.|.|  |.
Mouse   364 QNGKRINYTIN--IMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPY 426

  Fly   203 NVSIKEIFDFMNSKYRIQLDTYARLGYQARQPLRDMLDCKFKY---IFRD-----RWSDGNATGG 259
             |.:|:..:.:....|.:       ||...........|.|||   |..|     |.:|.....|
Mouse   427 -VMMKKNHEMLEGNERYE-------GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNG 483

  Fly   260 MIGDLILDKADLAIAPFIYSFDRAL---FLQPITKFSVFREICMFRNPRSVSAGLSATEFLQPFS 321
            |:|:|:..|||:||||...:..|..   |.:|.....:   ..|.:.|:....|:.:  ||.|.:
Mouse   484 MVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGI---SIMIKKPQKSKPGVFS--FLDPLA 543

  Fly   322 GGVWLTFALLLLLAGCLL----------WVTFILERRKQWKPS-------LLTSCLLSFGAGCIQ 369
            ..:|:......:....:|          |.|...|..::.:.|       :..|...|.||...|
Mouse   544 YEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQ 608

  Fly   370 GAWLTPRSMGGRMA-----FFALMVTSYLMYNYYTSIVVSKLLGQPIKS--NIRTLQQLADSNLD 427
            |..::|||:.||:.     ||.|::.|....|....:.|.::: .||:|  ::....::|...||
Mouse   609 GCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMV-SPIESAEDLSKQTEIAYGTLD 672

  Fly   428 VGIEPTVYTRIYVETSEEPDVRDLYRKKVLGSKRSPDKIWI------------PTEAGVLSVRDQ 480
            .|                 ..::.:|:..:...   ||:|.            .|..||..||..
Mouse   673 SG-----------------STKEFFRRSKIAVF---DKMWTYMRSAEPSVFVRTTAEGVARVRKS 717

  Fly   481 EG-FVYITGVATGYEFVRKHFLAHQICELNEIPLR-DASHTHTVLAKRSPYAELIKLSELRMLET 543
            :| :.|:. .:|..|::.:    .:.|:..::... |:........|.|.....:.|:.|::.|.
Mouse   718 KGKYAYLL-ESTMNEYIEQ----RKPCDTMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQ 777

  Fly   544 GVHFKHERSWMETKLHC-----YQHNHTVAVGLEYAAPLFIILLGAIILCMGILGLE 595
            ||..|.:..|...|..|     .....|.|:.|...|.:|.||:|.:.|.|.:..:|
Mouse   778 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 74/340 (22%)
Lig_chan 343..585 CDD:278489 60/274 (22%)
Gria2NP_001344853.2 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 12/35 (34%)
PBP2_iGluR_AMPA 413..794 CDD:270433 92/419 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846367
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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