DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and grin3bb

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:534 Identity:107/534 - (20%)
Similarity:195/534 - (36%) Gaps:168/534 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 VTYVTHDPFSKNFLLYDVYNKGRQLGGELNITADREIFCNKTNCRVERYLSELYTRSALQHRKSF 186
            ||.|.| ||        |:.  |::..:.|..|.:  :|..........|..||...| |..|||
Zfish   461 VTLVEH-PF--------VFT--REVDEDGNCPAGQ--YCLDAGTNSSETLDHLYAERA-QGNKSF 511

  Fly   187 TGLTMRATAVVTALPLNVS----------IKEIFDFMNSKYRIQLDTYARLGYQARQPLRDMLDC 241
                         ||.:.|          ::::.:.||    .:.|.|. :|           |.
Zfish   512 -------------LPPDYSKCCYGYCIDLLEKLSEDMN----FEFDLYI-VG-----------DG 547

  Fly   242 KFKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRAL---FLQPITKFSVFREICMFRN 303
            |:..:...:|:      |::|||:...||:|:..|..:..|:.   |..|.  ||....|.:   
Zfish   548 KYGAVKGGQWT------GLVGDLLSGVADMAVTSFSINSARSKVIDFTSPF--FSTSLGILV--- 601

  Fly   304 PRSVSAGLSATEFLQPFSGGVWL-TFALLLLLAGCLLWVTFILERRKQWK--------------- 352
             ||.........|:.|....:|: .|..|.:.|   |::|..     :||               
Zfish   602 -RSKDTAAPIGAFMWPLHWSMWMGIFVALHITA---LFLTLY-----EWKSPFGMTPHGRNRVKV 657

  Fly   353 ---PSLLTSC-LLSFGAGCIQGAWLTPRSMGGRM-----AFFALMVTSYLMYNYYTSIVVSKLLG 408
               .|.|..| .:.||...   :..||:...||.     |.|.|:|.|     .||:.:.:.::|
Zfish   658 FSYSSALNLCYAILFGRTV---SSKTPKCWTGRFLMNLWAIFCLLVLS-----SYTANLAAVMVG 714

  Fly   409 QPIKSNIRTLQQLA---DSNLDVGIEPTVYTRIYVETSEE------PDVRDLYRKKVLGSKRSPD 464
            :      :|.::::   |:.|....:...:..:...::|:      |::.:..||  .....:||
Zfish   715 E------KTFEEVSGIHDAKLHHPSQGFRFGTVRESSAEDYMKKSFPEMHEYMRK--FNEPTTPD 771

  Fly   465 KIWIPTEAGVLSVRDQ----EGFVYITGVATGYEFVRKHFLAHQI-----CELNEIPLRDASHTH 520
                    ||.:::..    :.|:           :.|..|.:::     |:|..:....|...:
Zfish   772 --------GVATLKTDPPQLDAFI-----------MDKALLDYEVSIDADCKLLTVGKPFAIEGY 817

  Fly   521 TV-LAKRSPYAELIKLSELRMLETG-VHFKHERSWMETKLHC----YQHNHTVAVGLEYAAPLFI 579
            .: |.:.||....|.....|....| :...|:: |.:. :.|    :....|:.:|:.:.:.|| 
Zfish   818 GIGLPQNSPLTSNISEFVSRYKSDGYMDMLHDK-WYKV-VPCGKRVFAVTETLQMGIRHFSGLF- 879

  Fly   580 ILLGAIILCMGILG 593
                 ::||:|:.|
Zfish   880 -----VLLCVGVTG 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 67/347 (19%)
Lig_chan 343..585 CDD:278489 49/289 (17%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 97/489 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591235
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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