DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir75b and grin2ca

DIOPT Version :9

Sequence 1:NP_001137966.2 Gene:Ir75b / 8673994 FlyBaseID:FBgn0261402 Length:605 Species:Drosophila melanogaster
Sequence 2:NP_001352716.1 Gene:grin2ca / 100003342 ZFINID:ZDB-GENE-070822-3 Length:1400 Species:Danio rerio


Alignment Length:503 Identity:103/503 - (20%)
Similarity:176/503 - (34%) Gaps:160/503 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 NKTNCRVERYLSELYTRSALQHRKSFTGLTMRATAVVTALPLNVSIKEIFDFMNSKYRIQLDTYA 225
            |...||.:...:|    :.:.|.:.:|.|..:...:.....|:.:||..:|       :.|.|..
Zfish   438 NTVPCRRQSNKTE----TIVGHTEPYTKLCCKGFCIDILKKLSRNIKFSYD-------LYLVTNG 491

  Fly   226 RLGYQARQPLRDMLDCKFKYIFRDRWSDGNATGGMIGDLILDKADLAIAPFIYSFDRALFLQPIT 290
            :.|                .:.|..|:      ||||::...:||:||.....:.:|:    .|.
Zfish   492 KHG----------------KLVRGIWN------GMIGEVFYKRADMAIGSLTINEERS----EII 530

  Fly   291 KFSV-FRE----ICMFRNPRSVSAGLSATEFLQPFSGGVWLTFALLLLLAGCLLWV---TFILER 347
            .||| |.|    :.:.|:..:|    |.:.||:|:|..||     :::...||..|   .|:.| 
Zfish   531 DFSVPFVETGISVMVARSNGTV----SPSAFLEPYSPAVW-----VMMFVMCLTVVAVTVFVFE- 585

  Fly   348 RKQWKPSLLTSCLLS--------FGAGCIQGAWL-------------TPRSMGGRM-----AFFA 386
              ...|......|:|        |..|  :..||             .|:....::     ||||
Zfish   586 --YCSPVGYNRSLVSAKDPGGPTFTIG--KSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFA 646

  Fly   387 LMVTSYLMYNYYTSIVVSKLLGQPIKSNIRTLQQLADSNLD----------VGIEPTVYTRIYVE 441
            ::..:     .||:.:.:.::.:   ..|.|:..|:|....          .|..|...|...:.
Zfish   647 VIFLA-----SYTANLAAFMIQE---QYIDTVSGLSDKKFQKPQDQYPPFRFGTVPNGSTERNIR 703

  Fly   442 TSEEPDVRD---LYRKK----VLGSKRSPDKIWIPTEAGVLSV---RDQ--------EGFVYITG 488
             |..|::..   .|.:|    .|.|.::........:|.||:.   :|:        .|.|:.| 
Zfish   704 -SNYPEMHSHMVKYNQKGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFAT- 766

  Fly   489 VATGYEFVRKHFLAHQICELNEIPLRDASHTHTVLAKRSPYAELIKLSELRMLETGVHFKHERSW 553
              |||..                          .|.|.|.:...|.|:.|:.|..|...|.:..|
Zfish   767 --TGYGI--------------------------ALQKESRWKRPIDLALLQFLADGDTQKLQTVW 803

  Fly   554 METKLHCYQHNHTV---AVGLEYAAPLFIILLGAIILCMGILGLEVIW 598
            : |.: |......|   .:.::..|.:|.:||    :.||:..|...|
Zfish   804 L-TGI-CRNEKKEVMSSKLDIDNMAGVFYMLL----VAMGLSLLVFAW 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir75bNP_001137966.2 Periplasmic_Binding_Protein_Type_2 253..553 CDD:304360 75/361 (21%)
Lig_chan 343..585 CDD:278489 56/298 (19%)
grin2caNP_001352716.1 PBP1_iGluR_NMDA_NR2 38..398 CDD:107373
PBP2_iGluR_NMDA_Nr2 409..810 CDD:270436 94/462 (20%)
NMDAR2_C 847..>938 CDD:313729
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591241
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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