DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nost and cd2ap

DIOPT Version :9

Sequence 1:NP_001285029.1 Gene:Nost / 8673992 FlyBaseID:FBgn0259734 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001121435.1 Gene:cd2ap / 100158527 XenbaseID:XB-GENE-987810 Length:734 Species:Xenopus tropicalis


Alignment Length:149 Identity:36/149 - (24%)
Similarity:66/149 - (44%) Gaps:25/149 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1189 NHHSDRGQADGGSNQQDSDF-DEFSSQDEDDEPQQPQQQPQPLQSQQQQQQPLLQNPTINGQVQT 1252
            |...:.|..:|..|.:...| |.|..:.:.|        |:|.:.....::.  ::..:...||.
 Frog    30 NKLEEDGWLEGEVNGKRGAFPDNFVKEVKKD--------PEPKEENVSNKRE--KSGNVASLVQR 84

  Fly  1253 QHFY--------QNAQELQKGQKNGSVPILGRCKALYSYTPKLYDELELSPGDIIEVHAKQDDGW 1309
            ...|        ...:.::|..|.      .:||.||.|.|:..|||||..|:::::..:.::||
 Frog    85 MSVYGIPGMGPPPQPKSIKKKSKK------RQCKVLYEYIPQNEDELELKVGEVLDIIEEVEEGW 143

  Fly  1310 WLGALRNHIGIFPATYVEE 1328
            |.|:.....|:||:.:|:|
 Frog   144 WSGSNSGKSGLFPSNFVKE 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NostNP_001285029.1 F-BAR_NOSTRIN 663..908 CDD:153342
SH3_Nostrin 1276..1328 CDD:212757 20/51 (39%)
cd2apNP_001121435.1 SH3_CD2AP_1 3..58 CDD:212986 7/27 (26%)
SH3_CD2AP_2 109..163 CDD:212987 21/54 (39%)
SH3_CD2AP_3 276..332 CDD:212989
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1577081at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14167
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

Return to query results.
Submit another query.