DRSC/TRiP Functional Genomics Resources

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Protein Alignment Skadu and cbx5

DIOPT Version :10

Sequence 1:NP_001162985.1 Gene:Skadu / 8673966 FlyBaseID:FBgn0259922 Length:133 Species:Drosophila melanogaster
Sequence 2:NP_001073653.1 Gene:cbx5 / 563396 ZFINID:ZDB-GENE-030131-5553 Length:204 Species:Danio rerio


Alignment Length:88 Identity:23/88 - (26%)
Similarity:39/88 - (44%) Gaps:8/88 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KPVKKFSSDLANLPPVPAIDAFERGYQVESILDMVQNIHKEQFLYIKFTNLIEPELVPLELALQH 105
            ||.||...::.      ....||||.:.|.|:....:.....|| :|:.:..|.:||..:.|...
Zfish   118 KPKKKKEDEIL------VARGFERGLEPEKIIGATDSCGDLMFL-MKWKDSDEADLVLAKEANHK 175

  Fly   106 VPHLLSDFYKEYVQAWQKMEQQK 128
            .|.::..||:|.: .|.:...:|
Zfish   176 CPQIVIAFYEERL-TWHEDGDKK 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkaduNP_001162985.1 CSD 66..116 CDD:349275 12/49 (24%)
cbx5NP_001073653.1 CD_HP1alpha_Cbx5 20..69 CDD:349298
CSD_HP1alpha_Cbx5 132..189 CDD:349302 17/58 (29%)
Blue background indicates that the domain is not in the aligned region.

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