DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHRD and sog

DIOPT Version :9

Sequence 1:XP_016862877.1 Gene:CHRD / 8646 HGNCID:1949 Length:982 Species:Homo sapiens
Sequence 2:NP_001259576.1 Gene:sog / 32498 FlyBaseID:FBgn0003463 Length:1038 Species:Drosophila melanogaster


Alignment Length:1062 Identity:289/1062 - (27%)
Similarity:423/1062 - (39%) Gaps:231/1062 - (21%)


- Green bases have known domain annotations that are detailed below.


Human    11 LLLLGLLLL-------GSRPARGAGPEPPVLPIRSEKEPLPVR----GAAGCTFGGKVYALDETW 64
            |::.|||::       |.|.|          |:..|:.....|    ....|.||..:..|..||
  Fly    61 LIIAGLLIVCLAGVTEGRRHA----------PLMFEESDTGRRSNRPAVTECQFGKVLRELGSTW 115

Human    65 HPDLGEPFGVMRCVLCACEA-PQWGRRTRGPGRVSCKNIKPECPTPACGQPRQLPGHCCQTCPQE 128
            :.|||.|||||.|:.|.|.| |   ::.|...||.|:|||.|||...|..|..|||.||:|||.:
  Fly   116 YADLGPPFGVMYCIKCECVAIP---KKRRIVARVQCRNIKNECPPAKCDDPISLPGKCCKTCPGD 177

Human   129 RSSSERQPSGLSFEYPRDPEHRSYSDRGEPGAEERARGDGHTDFVALLTGPRS------------ 181
            |:.::   ..|....|.:.|.|:..                 .:.|||||..|            
  Fly   178 RNDTD---VALDVPVPNEEEERNMK-----------------HYAALLTGRTSYFLKGEEMKSMY 222

Human   182 ------QAVARARVSLLRSSLRFSI-SYRRLDRPTRIRFSDSNGSVLFEHPAAPT---------- 229
                  ..||.||....:.:|.:|. :..|:.||..|:|.|..|.:|.||....|          
  Fly   223 TTYNPQNVVATARFLFHKKNLYYSFYTSSRIGRPRAIQFVDDAGVILEEHQLETTLAGTLSVYQN 287

Human   230 QDGLVCGVWRAVPRLSLRLLRAEQLHVALVTLTHPSGE--VWGPLIRHRALAAETFSAILTLEGP 292
            ..|.:|||||.|||...|:||.::|||.|:.......|  :.|.:.::.||..|.||::  ||.|
  Fly   288 ATGKICGVWRRVPRDYKRILRDDRLHVVLLWGNKQQAELALAGKVAKYTALQTELFSSL--LEAP 350

Human   293 -------PQ-QGVGGITLL-TLSDTEDSLHFLLLFRGLLEPRSGGKWDGGKTREKVRESTCLRKA 348
                   || .|.||..:: |.|....|:|..|:|.|:.     |..:.......|:.....||.
  Fly   351 LPDGKTDPQLAGAGGTAIVSTSSGAASSMHLTLVFNGVF-----GAEEYADAALSVKIELAERKE 410

Human   349 HMCGLAGLTQVPLRLQILHQGQLLRELQANVSAQEPGFAEVLPNLTVQEMDWLVLGELQMALEWA 413
            .:     ..::|          .:|:..|.::.     .|:...:::|.:..:..|:|.:.:|..
  Fly   411 VI-----FDEIP----------RVRKPSAEINV-----LELSSPISIQNLRLMSRGKLLLTVESK 455

Human   414 GRPGLRISGHIAARKSCDVLQSVLCGADALIPVQTGAAGSASLTLLGNGSLIYQVQV--VGTSSE 476
            ..|.|||.|||..|.||::.|::|....|  ...|.::|.|.:.|..:|||.|.::.  |.|...
  Fly   456 KYPHLRIQGHIVTRASCEIFQTLLAPHSA--ESSTKSSGLAWVYLNTDGSLAYNIETEHVNTRDR 518

Human   477 VVAMTLETKPQRRDQRTVLCHMAGLQP--GGHTAVGICPGLGARGAHMLLQNELFLNVGTKDFPD 539
            .....:|.:.:|:      ..:..|.|  ..:.|:|....||.:....|...||.:||.| :...
  Fly   519 PNISLIEEQGKRK------AKLEDLTPSFNFNQAIGSVEKLGPKVLESLYAGELGVNVAT-EHET 576

Human   540 GELRGHVAALPYCGHSARHDTLPVPLAGALVLPPVKSQAAGHAWLSLDTHCHLHYEVLLAGLGGS 604
            ..:||.:...|..  .||....|:.|............|.|.||:|:|..|:|||||.|.|:...
  Fly   577 SLIRGRLVPRPVA--DARDSAEPILLKRQEHTDAQNPHAVGMAWMSIDNECNLHYEVTLNGVPAQ 639

Human   605 EQGTVTAHLLGPP----GTPGPRRLLKGFYGSEAQGVVKDLEPELLRHLAKGMASLMITTKGSPR 665
            :   :..:|...|    |.|..|:||:.|.||..:|....:....|..|...:..|.:.:|.|.:
  Fly   640 D---LQLYLEEKPIEAIGAPVTRKLLEEFNGSYLEGFFLSMPSAELIKLEMSVCYLEVHSKHSKQ 701

Human   666 GELRGQVHIANQCEVGGLRLEAAGAEGVRALGAPDTASAAPPVVPG--LPALAPAKPGGPGRPRD 728
            ..|||::....                                |||  .|.........||...|
  Fly   702 LLLRGKLKSTK--------------------------------VPGHCFPVYTDNNVPVPGDHND 734

Human   729 ------PNTCFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVICDPVVCPPPSCPHP---VQAPDQ 784
                  ...||..|:......:|....|. |.:|.|.|....|:.:.||...|...   :|...:
  Fly   735 NHLVNGETKCFHSGRFYNESEQWRSAQDS-CQMCACLRGQSSCEVIKCPALKCKSTEQLLQRDGE 798

Human   785 CCPVCPEKQDVRDLPG----------LPRSRDPGEGCYFDGDRSWRAAGTRWHPVVPPFGLIKCA 839
            |||.|..|::..|...          |.:.|   .||.. |:: :..||..|||.:||.|...|.
  Fly   799 CCPSCVPKKEAADYSAQSSPATNATDLLQQR---RGCRL-GEQ-FHPAGASWHPFLPPNGFDTCT 858

Human   840 VCTCKGGTGEVHCEKVQCPRLACAQPVRVNPTD--CCKQCPVG----SGAH------PQL----- 887
            .|:|...|.|:.|.::.||.|.|::.:...|..  |||.||.|    |..|      |.:     
  Fly   859 TCSCDPLTLEIRCPRLVCPPLQCSEKLAYRPDKKACCKICPEGKQSSSNGHKTTPNNPNVLQDQA 923

Human   888 --------GDPMQADGPRGCRFAGQWFPESQSWHPSVPPFGEMSCITCRCGAGVPHCERDDCSLP 944
                    .:.:.|:|  ||:...:.:...|.|||.:...||..||.|||.....:|:|..||  
  Fly   924 MQRSPSHSAEEVLANG--GCKVVNKVYENGQEWHPILMSHGEQKCIKCRCKDSKVNCDRKRCS-- 984

Human   945 LSCGSGKESRC--CSRCTAHRR 964
                   .|.|  .:|.|:.||
  Fly   985 -------RSTCQQQTRVTSKRR 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHRDXP_016862877.1 None
sogNP_001259576.1 VWC 102..174 CDD:278520 36/74 (49%)
CHRD 200..334 CDD:214804 41/133 (31%)
CHRD 341..467 CDD:214804 36/152 (24%)
CHRD 473..585 CDD:214804 29/120 (24%)
CHRD 594..708 CDD:214804 35/116 (30%)
VWC 744..803 CDD:278520 17/59 (29%)
VWC 832..898 CDD:278520 24/67 (36%)
VWC 941..1017 CDD:278520 22/68 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 92 1.000 Domainoid score I7623
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2774
Inparanoid 1 1.050 312 1.000 Inparanoid score I2587
Isobase 1 0.950 - 0 Normalized mean entropy S7450
OMA 1 1.010 - - QHG49605
OrthoDB 1 1.010 - - D289212at33208
OrthoFinder 1 1.000 - - FOG0008063
OrthoInspector 1 1.000 - - oto88748
orthoMCL 1 0.900 - - OOG6_107806
Panther 1 1.100 - - LDO PTHR46526
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6013
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1312.930

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