DRSC/TRiP Functional Genomics Resources

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Protein Alignment PRPF18 and Prp18

DIOPT Version :9

Sequence 1:NP_003666.1 Gene:PRPF18 / 8559 HGNCID:17351 Length:342 Species:Homo sapiens
Sequence 2:NP_650776.1 Gene:Prp18 / 42285 FlyBaseID:FBgn0027784 Length:340 Species:Drosophila melanogaster


Alignment Length:339 Identity:175/339 - (51%)
Similarity:230/339 - (67%) Gaps:6/339 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     1 MDILKSEILRKRQLVEDRNLLVENKKYFKRSELAKKEEEAYFERCGYKIQPKEEDQKPLTSSNPV 65
            |||||:||.|||:|:|.|.|:.|.||||:|.:|..|..|...::.||..|...|.|...|.....
  Fly     1 MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQESVEAQGQTTEGAYS 65

Human    66 LELELAEEKLPMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAA 130
            ...: .:..||    |.|||||||||||||.:||||:.:||.|||:.||..||.|:|.|||.:.|
  Fly    66 FVAD-GQNILP----RTEVIRRLRERGEPILIFGETEPEAFDRLRQCEISQPEANRGFRNDFQEA 125

Human   131 LDKIDQQYLNEIVGGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKDMDIITKFLKFL 195
            ::::|..||.|:.......:||.::|....:|:.:.|.::.:..::|:..|: |||:|...|.||
  Fly   126 MEQVDAAYLQEMFANTPTTKEDKKSDFAELDESVSWESIQTMAANMGRNKDY-DMDVIITLLTFL 189

Human   196 LGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKESITDIIKFMLQR 260
            |.:|..::.....:.|.|.:.|:......||:.|::||||||:...||.||.:|:.||.|.:|.|
  Fly   190 LKLWNDQIANYSKHEKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKHLLNR 254

Human   261 EYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTIC 325
            .|:.|:||||:|||||||||||||||||||||||||||||:||||:|||||||||||||||||.|
  Fly   255 NYITASDAYLEMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVMNDETQRKYIQGLKRLMTKC 319

Human   326 QKHFPTDPSKCVEY 339
            |::|||||||||||
  Fly   320 QEYFPTDPSKCVEY 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRPF18NP_003666.1 SFM 79..122 CDD:128776 28/42 (67%)
Prp18 191..327 CDD:397123 84/135 (62%)
Prp18NP_650776.1 SFM 74..117 CDD:128776 30/46 (65%)
Prp18 186..322 CDD:280929 85/135 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165152565
Domainoid 1 1.000 183 1.000 Domainoid score I3421
eggNOG 1 0.900 - - E1_KOG2808
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2726
Inparanoid 1 1.050 339 1.000 Inparanoid score I2383
Isobase 1 0.950 - 0 Normalized mean entropy S2129
OMA 1 1.010 - - QHG54709
OrthoDB 1 1.010 - - D1485522at2759
OrthoFinder 1 1.000 - - FOG0004368
OrthoInspector 1 1.000 - - oto90363
orthoMCL 1 0.900 - - OOG6_102077
Panther 1 1.100 - - LDO PTHR13007
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R988
SonicParanoid 1 1.000 - - X3091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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