DRSC/TRiP Functional Genomics Resources

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Protein Alignment BHLHE40 and cwo

DIOPT Version :9

Sequence 1:NP_003661.1 Gene:BHLHE40 / 8553 HGNCID:1046 Length:412 Species:Homo sapiens
Sequence 2:NP_524775.1 Gene:cwo / 44669 FlyBaseID:FBgn0259938 Length:698 Species:Drosophila melanogaster


Alignment Length:603 Identity:113/603 - (18%)
Similarity:171/603 - (28%) Gaps:287/603 - (47%)


- Green bases have known domain annotations that are detailed below.


Human    44 KRSEDSKETYKLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALT 108
            :|::.|::. .|.||:|||:||||:|.|:|.|..|:|...:....|.:||..::|:.::|:|   
  Fly    55 RRNKTSRQD-PLSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGRIEKTEIIEMAIRHLK--- 115

Human   109 NLIDQQQQKIIALQSGLQ------------------AGELSGRNVETGQEMF----------C-- 143
            :|..:.|||....:||..                  ...|.||..|...|||          |  
  Fly   116 HLQSECQQKESDYRSGYMDCMKEAAKFLYDVHMQDFCHRLLGRLQEHIDEMFKTDCYKSTRSCHM 180

Human   144 -------SG----------------FQTCAREVLQYLAKHENTRDLKSSQLVTHLHR-------- 177
                   ||                ..|.|.:| ::...|.:.:||.....:..|.|        
  Fly   181 PDNVSASSGSPHQAYHPPLCHLRDMLATSASDV-EHSQDHNDVKDLSFRNHLNQLQRSQQAAAAA 244

Human   178 -VVSELLQ----------------------GGTSRKP--SDPAPKVMDFKEKPSSPAKG-SEGPG 216
             |.:..:.                      |||...|  :|..|.........::.|.| |...|
  Fly   245 AVAAAAVAVANGSSPASNAGVDSKVPLTNGGGTGGAPPAADNVPSNSTGSGSAAACAGGNSNSSG 309

Human   217 KN----------------C---------------VPVIQRTFAHSSGEQSGSD------------ 238
            .|                |               .|||..|..|.....:.|.            
  Fly   310 SNSSNAASSTICPPAGGSCPAKVTPLAAHQQPHQAPVITSTAPHHHHHHTDSSHHDFESSREPIL 374

Human   239 -TDTDS---------------------------------GYGGESE----------KGDLR---- 255
             |||.:                                 .|...|.          |..::    
  Fly   375 HTDTSNMHSPPPRDLLLQQHPHLAHSHHTQDSLMSVRMRNYSESSHEIEHNNNYKYKNHIKERFV 439

Human   256 --------SEQPC-----FKSDHGRRFTMGERIGAIKQESEEPP-----TKKNRM---------- 292
                    |.:.|     .:|||.....:.|.    .::..||.     .||.::          
  Fly   440 HELHDEETSSEHCPVAAHLQSDHSHLQALSEH----SKDGTEPEIAPIMAKKRKLAEAAANGEIP 500

Human   293 ----------------QLSDDEGHFTSSDL------------ISSPFL----------------- 312
                            :|......|..||:            .|||.|                 
  Fly   501 LEVHTESSNAGASSANRLDKPSPSFNFSDIKDIKAELHNGNSNSSPLLAKLSAVAAAGGQLSTPS 565

Human   313 ---GPHPHQPPFCLPFYLIPPSATAYLP----------------MLEKCWYPTSVPVLYPGLNAS 358
               .|.|.:..|.:|.:.:......|:|                :|||.:  ||:||::| :|.:
  Fly   566 STTAPLPPRHTFTVPIFALHGQGNYYVPLNVDYNALVPFLNGMDLLEKSY--TSMPVVHP-ININ 627

Human   359 AAALSSFMNPDKISAPLL 376
            .    :|| |...||.||
  Fly   628 V----NFM-PSSPSASLL 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BHLHE40NP_003661.1 Essential for interaction with ARNTL/BMAL1, E-box binding and repressor activity against the CLOCK-ARNTL/BMAL1 heterodimer 1..139 34/112 (30%)
bHLH-O_DEC1 40..129 CDD:381592 30/102 (29%)
Necessary for interaction with RXRA and repressor activity against RXRA. /evidence=ECO:0000269|PubMed:19786558 75..79 1/3 (33%)
ORANGE 140..184 CDD:128787 15/87 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..303 36/280 (13%)
cwoNP_524775.1 HLH 66..118 CDD:306515 21/54 (39%)
ORANGE 126..168 CDD:128787 8/41 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165140978
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4304
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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