DRSC/TRiP Functional Genomics Resources

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Protein Alignment LGR5 and Con

DIOPT Version :10

Sequence 1:NP_003658.1 Gene:LGR5 / 8549 HGNCID:4504 Length:907 Species:Homo sapiens
Sequence 2:NP_523930.3 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster


Alignment Length:495 Identity:126/495 - (25%)
Similarity:193/495 - (38%) Gaps:100/495 - (20%)


- Green bases have known domain annotations that are detailed below.


Human    19 ATGGSSPRSG----VLLRGCPTHCHCEPDGR--MLLRVDCSDLGLSELPSNLSVFTSYLDLSMNN 77
            :||.|.|...    ...|.....|:|.||..  .:.:.:|            .||:..|.     
  Fly    96 STGYSGPMDSTGFCTRRRDMKLMCYCTPDENHVPVQKAEC------------WVFSEGLH----- 143

Human    78 ISQLLPNPLPSLRFLEELRL-------AGNA-LTYIPKGAFTGLYSLKVLMLQNNQLRHVPTEAL 134
                 .|.....||.::.||       ..|| |.|||......|.:|..::::.:|:..|.:.|.
  Fly   144 -----QNDTTWTRFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAF 203

Human   135 QNLRSLQSLRLDANHISYVPPSCFSGLHSLRHLWLDDNALTEIPVQAFRSLSALQAMTLALNKIH 199
            .||..|:.:.|:.|||..:....|:....||.|.|:.|.:.|:...|||:|...:.:.|..|.|.
  Fly   204 ANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNIS 268

Human   200 HIPDYAFGNLSSLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEF-PTAIRTLSNLKELG 263
            .:.:..|.:::.|..|:|.:|:|:.|..:.|.||.:|..|.|..|||:.. .|....|.:|.||.
  Fly   269 TLHEGLFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELE 333

Human   264 FHSNNIRSIPEKAFVGNPSLITIHFYDNPIQFVGRSAFQHLPELRTLTLNGASQITEFPDLTGTA 328
            ...|.|..|.|:|..|..:|.|::..:|.::.:.....:..|.|.::.:.              |
  Fly   334 LDDNRIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQ--------------A 384

Human   329 N-LESLTLTGAQISSLPQTVCNQLPNLQVLDLSYNLLEDLPSFSVCQKLQKIDLRHNEIYEIKVD 392
            | ||:||....|  .:...:.|....|.|.|..:          :|      |.|...|:|:|..
  Fly   385 NKLETLTFYTFQ--PIMDNLVNSTSELLVSDNKF----------IC------DCRLQWIFELKNR 431

Human   393 T--FQQLLSLRSLNLAWNKIAIIHPNAFSTLPSLIKLD---------LSSNLLS------SFPIT 440
            |  .|...||..|:....:..:.|  ....:|..| ||         :.||..|      |...:
  Fly   432 TRHLQLRDSLEDLHCTLQEPKLSH--FVDPVPPTI-LDVLNIGGFTAIGSNSASMGGVGNSVVGS 493

Human   441 GLHGLT------HLKLTGNHAL----QSLISSENFPELKV 470
            ...|||      ||......||    |...|:||..|.|:
  Fly   494 SYSGLTMDDSRKHLGSRSRQALRGQRQFASSAENVVESKM 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LGR5NP_003658.1 LRRNT 33..65 CDD:396168 5/33 (15%)
leucine-rich repeat 68..91 CDD:275380 2/22 (9%)
LRR 92..477 CDD:443914 110/416 (26%)
leucine-rich repeat 92..115 CDD:275380 9/30 (30%)
leucine-rich repeat 116..139 CDD:275380 6/22 (27%)
leucine-rich repeat 140..163 CDD:275380 6/22 (27%)
leucine-rich repeat 164..187 CDD:275380 10/22 (45%)
leucine-rich repeat 188..211 CDD:275380 4/22 (18%)
leucine-rich repeat 212..235 CDD:275380 9/22 (41%)
leucine-rich repeat 236..258 CDD:275380 8/22 (36%)
leucine-rich repeat 259..282 CDD:275380 9/22 (41%)
leucine-rich repeat 283..304 CDD:275380 3/20 (15%)
leucine-rich repeat 307..353 CDD:275378 9/46 (20%)
leucine-rich repeat 354..375 CDD:275378 4/20 (20%)
leucine-rich repeat 376..389 CDD:275378 3/12 (25%)
leucine-rich repeat 400..423 CDD:275378 3/22 (14%)
leucine-rich repeat 445..459 CDD:275378 7/23 (30%)
7tmA_LGR5 558..831 CDD:320485
TM helix 1 559..585 CDD:320485
TM helix 2 592..617 CDD:320485
TM helix 3 637..667 CDD:320485
TM helix 4 679..701 CDD:320485
TM helix 5 721..750 CDD:320485
TM helix 6 759..789 CDD:320485
TM helix 7 799..824 CDD:320485
ConNP_523930.3 LRR <157..459 CDD:443914 89/335 (27%)
leucine-rich repeat 185..208 CDD:275380 6/22 (27%)
leucine-rich repeat 209..232 CDD:275380 6/22 (27%)
leucine-rich repeat 233..256 CDD:275380 10/22 (45%)
leucine-rich repeat 257..280 CDD:275380 4/22 (18%)
leucine-rich repeat 281..304 CDD:275380 9/22 (41%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 9/22 (41%)
leucine-rich repeat 353..376 CDD:275380 3/22 (14%)
Blue background indicates that the domain is not in the aligned region.

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