DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GFM1 and gfm-1

DIOPT Version :10

Sequence 1:NP_001295093.1 Gene:GFM1 / 85476 HGNCID:13780 Length:770 Species:Homo sapiens
Sequence 2:NP_496787.1 Gene:gfm-1 / 174956 WormBaseID:WBGene00009246 Length:750 Species:Caenorhabditis elegans


Alignment Length:772 Identity:420/772 - (54%)
Similarity:544/772 - (70%) Gaps:35/772 - (4%)


- Green bases have known domain annotations that are detailed below.


Human     9 VAALGRGRAPASLGWQRKQVNWKACRWSSS---------GVIPNEKIRNIGISAHIDSGKTTLTE 64
            ::.|||..|.|.   .|:|:|....|::|:         ||.|.|:||||||||||||||||:||
 Worm     1 MSPLGRFSAVAQ---SRRQLNNVLRRFASNEAPSSVVVPGVRPIERIRNIGISAHIDSGKTTVTE 62

Human    65 RVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDVNINIIDTPGHVDFTI 129
            |:|||.|||..||||:|||.|||.||.|:|||||||||||||||..|...||||||||||||||:
 Worm    63 RILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTV 127

Human   130 EVERALRVLDGAVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRMGSNPARALQQMRSKL 194
            |||||||||||||||||.|||||.||.|||||:.||||||:.|:||:||.|:.|.:||..:|:||
 Worm   128 EVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICFVNKMDRNGATPLKALDGLRNKL 192

Human   195 NHNAAFMQIPMGLEGNFKGIVDLIEERAIYFDGDFGHFLRDFLPLLWNWDRRSGSQIVRYGEIPA 259
            |||||.:.:|:|.:.||.|||||:|..|:|::|:                   |..|||..|||.
 Worm   193 NHNAALIHLPIGKDSNFNGIVDLVEGHALYYEGE-------------------GGLIVRKDEIPK 238

Human   260 ELRAAATDHRQELIECVANSDEQLGEMFLEEKIPSISDLKLAIRRATLKRSFTPVFLGSALKNKG 324
            :||..|.|.||||||.:||.||.||||||.::.|::..:..||||..:||:|.||..||||||||
 Worm   239 DLRVEAEDRRQELIEHIANVDETLGEMFLNDQTPNVQQIHEAIRRTVVKRAFVPVLSGSALKNKG 303

Human   325 VQPLLDAVLEYLPNPSEVQNYAILNKEDDSKEKTKILMNSSRDNSHPFVGLAFKLEVGRFGQLTY 389
            ||.::::|::|||:||||.|.|.:..|....|| .|:::..|:|..||||||||||.|::|||||
 Worm   304 VQTMINSVVKYLPDPSEVVNRATVKTETTGDEK-GIILSPKRNNDKPFVGLAFKLEAGKYGQLTY 367

Human   390 VRSYQGELKKGDTIYNTRTRKKVRLQRLARMHADMMEDVEEVYAGDICALFGIDCASGDTFTDKA 454
            .|.|||:|.||||:|.:|..:|||:|||.||||..||::...|||||||.||:||.||:||:...
 Worm   368 FRVYQGQLSKGDTVYASRDGRKVRVQRLVRMHAADMEEITTAYAGDICATFGLDCHSGETFSTDQ 432

Human   455 NSGLSMESIHVPDPVISIAMKPSNKNDLEKFSKGIGRFTREDPTFKVYFDTENKETVISGMGELH 519
            |.....||:|:|:||||:|:||.|:.|.:.|.|.:.|||:|||||:..::.|.|||::|||||||
 Worm   433 NLAPHCESMHIPEPVISMAIKPVNRKDADNFIKALTRFTKEDPTFRREYNQEAKETIVSGMGELH 497

Human   520 LEIYAQRLEREYGCPCITGKPKVAFRETITAPVPFDFTHKKQSGGAGQYGKVIGVLEPLDPEDYT 584
            |||||||::.||.||...|||.||:||.:.:|..|.|.||||:||.||:|::.||::||..:..|
 Worm   498 LEIYAQRMKSEYNCPVELGKPTVAYRECLGSPYKFHFRHKKQTGGQGQFGEIEGVIDPLPSDRNT 562

Human   585 KLEFSDETFGSNIPKQFVPAVEKGFLDA-CEKGPLSGHKLSGLRFVLQDGAHHMVDSNEISFIRA 648
            .:||||||||:||||...||::|| ||| ..:|||...:::|:...:|||:.|.|||.||:.|..
 Worm   563 VVEFSDETFGNNIPKNLFPALKKG-LDAIVAEGPLIKSRIAGIHVRIQDGSTHAVDSTEIAMINT 626

Human   649 GEGALKQALANATLCILEPIMAVEVVAPNEFQGQVIAGINRRHGVITGQDGVEDYFTLYADVPLN 713
            .:..::::...|...:|||||.||...|.||||.|:..:.:|:.:||..|..|.|.|:..:.||:
 Worm   627 MQNMMRESFEKANWLLLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEAPLS 691

Human   714 DMFGYSTELRSCTEGKGEYTMEYSRYQPCLPSTQEDVINKYLEATGQL-PVKKGKAK 769
            |||||::||||.||||||::||||||.|.....|:.|..::.:..|.. |.:|||.|
 Worm   692 DMFGYTSELRSLTEGKGEFSMEYSRYAPTTLEAQDRVQAEWRQLHGIADPNEKGKKK 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GFM1NP_001295093.1 FusA 39..754 CDD:440248 404/715 (57%)
gfm-1NP_496787.1 FusA 37..731 CDD:440248 404/714 (57%)

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