DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TUL1 and toe-4

DIOPT Version :9

Sequence 1:NP_012890.1 Gene:TUL1 / 853832 SGDID:S000001517 Length:758 Species:Saccharomyces cerevisiae
Sequence 2:NP_493231.1 Gene:toe-4 / 173144 WormBaseID:WBGene00012194 Length:489 Species:Caenorhabditis elegans


Alignment Length:178 Identity:43/178 - (24%)
Similarity:59/178 - (33%) Gaps:61/178 - (34%)


- Green bases have known domain annotations that are detailed below.


Yeast   596 RSQNKMPLLWSFVIGTTIIRSLPV-----VYVFTYSSNVFRHHKDVHFVVFLSLWLLFQISILYS 655
            |.||....|::|       |:.|:     .||..|..            :|.|...||..|..|.
 Worm   343 RPQNNPYNLYAF-------RNSPINVHAPGYVGEYVE------------LFRSQQFLFPTSERYG 388

Yeast   656 QD-------------VLGSRWFLPKHTIPDGYSYFKPLSNEYISEHGGGTAEHTVDCAICMSDVP 707
            .|             |..|:..:...|||          ..|..:..|...|.|  |.:|:|...
 Worm   389 IDRHHMFGGLDLDLPVGASKVEIDTFTIP----------TVYAKKTDGEEDEDT--CTVCLSSFE 441

Yeast   708 IYIEEIPETHKVDQHSYMVTPCNHVFHTSCLENWMNYKLQCPVCRSPL 755
                        |..|.....||||||..|:..|::...:||:||..:
 Worm   442 ------------DGESIQKLRCNHVFHPECIYKWLDINKRCPMCREEI 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TUL1NP_012890.1 COG5540 320..758 CDD:227827 43/178 (24%)
toe-4NP_493231.1 RING-H2_RNF111_like 431..475 CDD:319388 17/57 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.