DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CDC48 and TER94

DIOPT Version :9

Sequence 1:NP_010157.1 Gene:CDC48 / 851431 SGDID:S000002284 Length:835 Species:Saccharomyces cerevisiae
Sequence 2:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster


Alignment Length:836 Identity:558/836 - (66%)
Similarity:682/836 - (81%) Gaps:29/836 - (3%)


- Green bases have known domain annotations that are detailed below.


Yeast     3 EEHKPLLDASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTV 67
            |:.:.:......|.||:  .|||||:||.:.|.|:|::|.||||||::::...||:|:|||||||
  Fly    17 EQDEKMKPKDSFDKRED--LATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTV 79

Yeast    68 LVKGKKRKDTVLIVLIDDELEDGACRINRVVRNNLRIRLGDLVTIHPCPDIKYATRISVLPIADT 132
            ::|||:||:||.|||.||...|...|:||||||||.:.|.|:|::..|||:||..|:.:|||.::
  Fly    80 ILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDES 144

Yeast   133 IEGITGNLFDVFLKPYFVEAYRPVRKGDHFVVRGGMRQVEFKVVDVEPEEYAVVAQDTIIHWEGE 197
            .||:|||||:::|||||:|||||:..||:|:||..||.:|||||..:||.|.:||.:|:|..:|:
  Fly   145 TEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGD 209

Yeast   198 PINREDEENNMNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKT 262
            ||.||:||.::|.||||||||||||:|||:||||||||||.||||||:|||||:|||||||||||
  Fly   210 PIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKT 274

Yeast   263 LMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTN 327
            |:|||||||||||||||||||:|||:||||||||||||||||||:||||||||||:||||||||:
  Fly   275 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTH 339

Yeast   328 GEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLR 392
            ||||||:||||||||||||..|:::|:||||||||||||||||||||||:|||||||||||||||
  Fly   340 GEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLR 404

Yeast   393 IHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDEDEIDAEVLDSLGV 457
            ||||||||.||||||.:|||:||:||||:||||||||:||||||||||||::|:||||||.||.|
  Fly   405 IHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAV 469

Yeast   458 TMDNFRFALGNSNPSALRETVVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSK 522
            ||:|||:|:..|:||||||||||..|.||.|:|||:.:|:||:|.|:|||.|||::.|||:.||:
  Fly   470 TMENFRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSR 534

Yeast   523 GVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLD 587
            |||||||||.||||||||:|.|..||||||||||||:||:||||:|:||||||||:|||.|:|.|
  Fly   535 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFD 599

Yeast   588 ELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQL 652
            |||||||||||::||||||:|||:||:|||||||.||||||:||||||||.||||||||||||||
  Fly   600 ELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQL 664

Yeast   653 IYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHR 717
            ||:||||:.:|.:||.|.|||:||...::||.|||.|||||||||..|.|||.|.||:.:|||..
  Fly   665 IYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI 729

Yeast   718 QHEAEKEVKVEGEDVEMTDEGAKAEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQ 782
            :.|.|   :.|.::..|..:        |.||||.||..||.||||.|:|||||.::|:||.::|
  Fly   730 RREKE---RAENQNSAMDMD--------EDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQ 783

Yeast   783 QMKASRGQFSNFNFNDAPLGTTATDNANSNN---SAPSGAGAAFGSNAEEDDDLYS 835
            .::.|||...||.|.    |.|...:.:.||   ::|...|         ||||||
  Fly   784 TLQQSRGFGQNFRFP----GQTGNTSGSGNNLPVNSPGDNG---------DDDLYS 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC48NP_010157.1 CDC48 48..785 CDD:273521 520/736 (71%)
TER94NP_001097249.1 CDC48 47..787 CDD:273521 528/750 (70%)
CDC48_N 47..129 CDD:280513 45/81 (56%)
CDC48_2 153..213 CDD:215011 33/59 (56%)
AAA 263..392 CDD:278434 113/128 (88%)
AAA 536..669 CDD:278434 110/132 (83%)
Vps4_C <741..783 CDD:286426 23/49 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 237 1.000 Domainoid score I381
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5168
Inparanoid 1 1.050 1113 1.000 Inparanoid score I19
Isobase 1 0.950 - 0 Normalized mean entropy S74
OMA 1 1.010 - - QHG60945
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 1 1.000 - - oto99988
orthoMCL 1 0.900 - - OOG6_100525
Panther 1 1.100 - - LDO PTHR23077
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R182
SonicParanoid 1 1.000 - - X1760
TreeFam 1 0.960 - -
1514.810

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