DRSC/TRiP Functional Genomics Resources

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Protein Alignment AFG2 and TER94

DIOPT Version :9

Sequence 1:NP_013501.1 Gene:AFG2 / 851113 SGDID:S000004389 Length:780 Species:Saccharomyces cerevisiae
Sequence 2:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster


Alignment Length:736 Identity:284/736 - (38%)
Similarity:404/736 - (54%) Gaps:124/736 - (16%)


- Green bases have known domain annotations that are detailed below.


Yeast   153 DDSGVIMPG-------MIFQN----LKTKAGDESIDVVITDASDDSLPDV---------SQLDLN 197
            ||:.|:...       .:|:.    ||.|...|::.:|:   |||:.||.         :.|.::
  Fly    56 DDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVL---SDDTCPDEKIRMNRVVRNNLCVH 117

Yeast   198 MDDMY------------------------GGLDNLF--YLSPPFI-----FRKGSTHITFSKETQ 231
            :.|:.                        |...|||  ||.|.|:     ...|...|..:....
  Fly   118 LSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRP 182

Yeast   232 ANRKYNL--PEP----------------------------LSYAAVGGLDKEIESLKSAIEIPLH 266
            ...|..|  |||                            :.|..:||..|::..:|..:|:||.
  Fly   183 IEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLR 247

Yeast   267 QPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIF 331
            .|:||.:.||.||||||::||||||||::.|.|||.:.|....||||.|:||..||:|:.||..|
  Fly   248 HPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 312

Yeast   332 NEARKYQPSIIFIDEIDSIAPNRANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVD 396
            .||.|..|:||||||||:|||.| :...||||.|:|:.||||||||..:..::|:||||||||:|
  Fly   313 EEAEKNSPAIIFIDEIDAIAPKR-DKTHGEVERRIVSQLLTLMDGMKKSSHLIVMAATNRPNSID 376

Yeast   397 PALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTALC 461
            |||||.||||:|::|||||...|.::|......|.    :.|...::.||:::||:|||||.:||
  Fly   377 PALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMK----LHDDVDLEQIAAESHGHVGADLASLC 437

Yeast   462 RESVMKTIQRGLG-TDANIDKF------SLKVTLKDVESAMVDIRPSAMREIFLEMPKVYWSDIG 519
            .|:.::.|:..:. .|...||.      ||.||:::...||....|||:||..:|:|...|:|||
  Fly   438 SEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVVEVPNTTWTDIG 502

Yeast   520 GQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGP 584
            |.|.:|.:::|::|.|:|..:.|.:.|:...:|||.||||||.|||.|||:|.|...||::||||
  Fly   503 GLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 567

Yeast   585 EIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGS---STSAANHVLTSLLNEIDG 646
            |:...:.||||..:|:||.|||||||.::||||:|:::..|.|:   :..||:.|:..:|.|:||
  Fly   568 ELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDG 632

Yeast   647 VEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHE 711
            :...|.|.|:.||||||.||.|:|||||||:.||:..||..:|..|||...:|....:. |||..
  Fly   633 MGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKE-VDLTY 696

Yeast   712 LADRTEGYSGAEVVLLCQEAGLAAIME--------------------DLD----VAKVELRHFEK 752
            :|..|:|:|||::..:||.|...||.:                    |:|    |.::...|||:
  Fly   697 IAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEE 761

Yeast   753 AFKGIARGITPEMLSYYEEFA 773
            |.|...|.::...:..||.||
  Fly   762 AMKFARRSVSDNDIRKYEMFA 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AFG2NP_013501.1 CDC48 51..773 CDD:273521 282/734 (38%)
TER94NP_001097249.1 CDC48 47..787 CDD:273521 284/736 (39%)
CDC48_N 47..129 CDD:280513 16/75 (21%)
CDC48_2 153..213 CDD:215011 12/59 (20%)
AAA 263..392 CDD:278434 78/129 (60%)
AAA 536..669 CDD:278434 72/132 (55%)
Vps4_C <741..783 CDD:286426 13/42 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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