DRSC/TRiP Functional Genomics Resources

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Protein Alignment CDC42 and RhoBTB

DIOPT Version :10

Sequence 1:NP_013330.1 Gene:CDC42 / 850930 SGDID:S000004219 Length:191 Species:Saccharomyces cerevisiae
Sequence 2:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster


Alignment Length:203 Identity:72/203 - (35%)
Similarity:108/203 - (53%) Gaps:30/203 - (14%)


- Green bases have known domain annotations that are detailed below.


Yeast     2 QTLKCVVVGDGAVGKTCLLISYTTN------QFPADYVPTVF--DNYAVTVMIGDEPY------- 51
            :.:|||:|||.|||||.|:.:...|      |..:.:||||:  |.|.:...:.:..:       
  Fly    12 ELVKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVN 76

Yeast    52 -TLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHHHCPGVPCLVVGT 115
             :|.|:||.|  |:|:.|..:|..:||.|:|||:.||.|..|.|..|:||:...||.||.::||.
  Fly    77 VSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGC 139

Yeast   116 QIDL----RDDKVII---EK--LQRQRLRP--ITSEQGSRLARELKAVKYVECSALTQRGLKNVF 169
            :.||    ||:..:.   ||  ..|..|:.  :..::...:|:|| .|.|.|.|..|..|:..||
  Fly   140 KNDLRYMYRDENYLSYFGEKGTFVRAALKSDLVMPDEARAVAKEL-GVAYYETSVFTYFGVNEVF 203

Yeast   170 DEAIVAAL 177
            :.||.:||
  Fly   204 ENAIRSAL 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CDC42NP_013330.1 Cdc42 3..177 CDD:206664 70/200 (35%)
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 70/200 (35%)
BTB1_POZ_RhoBTB 255..452 CDD:349608
BTB2_POZ_RhoBTB 475..582 CDD:349609
BACK_RHOBTB 593..669 CDD:350574
Blue background indicates that the domain is not in the aligned region.

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