DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBM17 and Spf45

DIOPT Version :9

Sequence 1:NP_001139019.1 Gene:RBM17 / 84991 HGNCID:16944 Length:401 Species:Homo sapiens
Sequence 2:NP_001036426.1 Gene:Spf45 / 3355114 FlyBaseID:FBgn0086683 Length:403 Species:Drosophila melanogaster


Alignment Length:456 Identity:161/456 - (35%)
Similarity:219/456 - (48%) Gaps:113/456 - (24%)


- Green bases have known domain annotations that are detailed below.


Human     1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRGGSSDD 65
            |.|||.:......|:.:|||...|:||:||.||.|.          :..::.||::|:....:|.
  Fly     1 MDLYDGIDTRARSSQIDGWSSGIKMLQTQLAVKMAV----------KKPLMTPVVNLRSKRLADP 55

Human    66 RQIVDTPPHVAAGLKDPVPSGFSAGEVL-------IPLADEYDPMFPNDYEKVVKRQREERQRQR 123
            ......|  :...:..|:.||.:...:|       ..:||||||..||:|||:.::.....:.:.
  Fly    56 EVTCFAP--ITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRA 118

Human   124 ELERQKEIEEREKRRK----DRHE------------ASGFARRPDPDSDEDEDYERERRKRSMGG 172
            .:..:::.:::||.||    .|.|            .|||..|   .:|:|............||
  Fly   119 GVSDREDRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHR---QNDDDMYLPSPGLVAKQGG 180

Human   173 AAIAPPTSL----VEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLAN 233
            |.||||.||    ::...|.....||...|                                   
  Fly   181 ATIAPPPSLQEMSIDSGCEATNTMPYSASS----------------------------------- 210

Human   234 MGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKII----------------VGDA 282
                ||.|||.||||::||||||.|||::.||.|||||||||:||                :|..
  Fly   211 ----VAAKIMAKYGFKDGQGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQ 271

Human   283 TEKDASKKSDSNP---------------LTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE- 331
            .....|.|:...|               :|||:|.|:||||||||||.|:|||:||.|.|:||. 
  Fly   272 IGTSPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKDECNT 336

Human   332 KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLD 396
            |||:|...:|.|..|...::||:||:||.|:|||||||||||||:||||.|:|.|||.|||:...
  Fly   337 KYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFFGGRQVRAGFYNYDKFKCFQ 401

Human   397 L 397
            |
  Fly   402 L 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBM17NP_001139019.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..84 4/26 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..233 25/138 (18%)
G-patch 235..279 CDD:396249 31/59 (53%)
RRM_UHM_SPF45 303..397 CDD:410051 60/94 (64%)
Spf45NP_001036426.1 G-patch 209..248 CDD:279867 28/77 (36%)
RRM_UHM_SPF45 307..402 CDD:241091 60/94 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147649
Domainoid 1 1.000 74 1.000 Domainoid score I9210
eggNOG 1 0.900 - - E1_KOG1996
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13162
Inparanoid 1 1.050 227 1.000 Inparanoid score I3489
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60100
OrthoDB 1 1.010 - - D1101846at2759
OrthoFinder 1 1.000 - - FOG0005833
OrthoInspector 1 1.000 - - oto89643
orthoMCL 1 0.900 - - OOG6_103640
Panther 1 1.100 - - LDO PTHR13288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3833
SonicParanoid 1 1.000 - - X4816
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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